Expression Summary

Expressions

Publication	Data		Expressed Genes	Anatomy
Kesavan et al., 2020	Fig. 2		ism1	(not) midbrain hindbrain boundary neural rod (not) midbrain hindbrain boundary neural rod
Gebuijs et al., 2019	Fig. 5		col1a1a	whole organism
			col1a2	whole organism
			col2a1a	whole organism
			col9a1a	whole organism
			col9a1b	whole organism
			dlx2a	whole organism
			fgf8a	whole organism
			nkx3-2	whole organism
			runx2a	whole organism
			runx2b	whole organism
			sp7	whole organism
	Fig. 6.		col2a1a	whole organism
			dlx2a	telencephalon (not) whole organism
			fgf8a	somite whole organism
			runx2a	whole organism
Nittoli et al., 2019	Fig. 8		uncx	somite
			uncx4.1	somite
Roberson et al., 2017	Fig. 5		dbx1b	diencephalon dorsal region
	Fig. 6		ackr3b	diencephalon dorsal region
			cxcl12b	diencephalon dorsal region
			wls	diencephalon
McCarthy et al., 2016	Fig. 5		col2a1a	chondrocyte
			sox9a	chondroblast
	Fig. 7		has2	mesoderm anterior region
	Fig. 8		has2	mesoderm anterior region (not) mesoderm anterior region
Maier et al., 2014	Fig. 3		atoh1a	macula
			sox2	macula
			tecta	macula
	Fig. 9		aldh1a3	(not) otic vesicle
Zeng et al., 2014	Fig. S1		ltbp3	presumptive bulbus arteriosus
			mef2cb	(not) presumptive bulbus arteriosus
Kapsimali et al., 2011	Fig. 2		calb2b	oral epithelium taste bud
Kok et al., 2010	Fig. 5		myod1	(not) somite lateral region
Hong et al., 2009	Fig. S3		ier2a	tail bud
Kwon et al., 2009	Fig. 2		cldna	otic vesicle
			pax8	otic placode
Lee et al., 2009	Fig. 5		foxd5	adaxial cell
	Fig. 7		mespaa	segmental plate anterior region
			mespba	segmental plate anterior region
McMahon et al., 2009	Fig. 11		efna5a	eye
			epha4b	eye
			tbx5a	eye dorsal region
Picker et al., 2009	Fig. 1		efna5a	optic cup anterior region
			epha4b	optic cup posterior region
Knight et al., 2008	Fig. 2		en2a	constrictor dorsalis
Komisarczuk et al., 2008	Fig. 6		spry1	(not) midbrain hindbrain boundary
Marques et al., 2008	Fig. 2		myh6	heart rudiment
			myh7	heart rudiment
Ochi et al., 2008	Fig. 3		smarcd3b	mesoderm
			spry2	unspecified
	Fig. 5		myod1	adaxial cell
Sperber et al., 2008	Fig. 8		barx1	pharyngeal arch 3-7
Hammond et al., 2007	Fig. 5		pax3a	nervous system
			pax7a	somite
Hans et al., 2007	Fig. 5		pax8	(not) otic placode otic placode
			stm	otic vesicle (not) otic vesicle
Mann et al., 2007	Fig. 3		noto	fast muscle cell
Nechiporuk et al., 2007	Fig. 5		eya1	unspecified
			foxi1	neurogenic placode
			neurog1	vagal ganglion 4
			pax2a	otic placode vagal ganglion 1
			phox2bb	glossopharyngeal ganglion
Nikaido et al., 2007	Fig. 2		sox3	neurogenic placode
Plaster et al., 2007	Fig. 5		myod1	paraxial mesoderm
			pcdh8	segmental plate
			tbxta	axial mesoderm
	Fig. 8		pcdh8	paraxial mesoderm
Sun et al., 2007	Fig. 5		pax2a	midbrain hindbrain boundary neural rod epibranchial field
			sox3	epibranchial field central nervous system
Wendl et al., 2007	Fig. 6		hhex	pharyngeal endoderm
			nkx2.4b	hypothalamus
			pax2a	thyroid primordium
Del Giacco et al., 2006	Fig. 7		otpb	preoptic area
	Fig. 9		otpb	caudal tuberculum
Foucher et al., 2006	Fig. 4		atoh1a	(not) midbrain hindbrain boundary
	Fig. 5		pax6a	(not) cerebellum
			reln	(not) cerebellum
	Fig. 6		etv5b	(not) midbrain hindbrain boundary (not) midbrain hindbrain boundary neural plate
	Fig. 7		gbx2	(not) hindbrain neural keel
			otx2b	hindbrain neural keel
	Fig. S1		fgf3	(not) midbrain hindbrain boundary neural rod
	Fig. S2		etv4	(not) midbrain hindbrain boundary (not) midbrain hindbrain boundary neural plate
			spry4	(not) midbrain hindbrain boundary (not) midbrain hindbrain boundary neural plate
	Fig. S3		irx1b	rhombomere 1
			irx2a	rhombomere 1
Hamade et al., 2006	Fig. 10		myod1	somite adaxial cell
	Fig. 11		aldh1a2	somite
			cyp26a1	tail bud
			myod1	(not) otic placode
			pax2a	midbrain hindbrain boundary neural rod
Hirate et al., 2006	Fig. 1		cnpy1	(not) midbrain hindbrain boundary
Albertson et al., 2005	Fig. 1		pitx2	floor plate diencephalic region
			spaw	lateral plate mesoderm
			tbxta	axial mesoderm margin
	Fig. 2		dlx2a	pharyngeal arch 2 skeleton
			nkx2.3	pharyngeal pouches 2-6
Groves et al., 2005	Fig. 2		mylpfa	somite
	Fig. 3		myf5	somite
			myod1	somite
Keegan et al., 2005	Fig. S2		myl7	heart primordium
Mackereth et al., 2005	Fig. 4		dlx3b	otic placode
			pax2a	otic placode
			pax8	otic placode
	Fig. 7		pax2a	otic placode otic placode
Nicoli et al., 2005	Fig. 7		grem1a	(not) segmental plate somite
Ninkovic et al., 2005	Fig. 3		her11	midbrain hindbrain boundary
Picker et al., 2005	Fig. 3		efna5a	presumptive neural retina
			epha4b	presumptive neural retina
			foxg1a	presumptive neural retina
			tbx5a	presumptive neural retina
			vax2	presumptive neural retina
	Fig. 5		spry4	presumptive telencephalon
Whitlock et al., 2005	Fig. 3		gnrh2	midbrain
Crump et al., 2004	Fig. 6		dlx2a	mesenchyme derived from head neural crest pharyngeal arch 3-7 skeleton
			egr2b	rhombomere 5
			foxa2	endoderm
			nkx2.7	endoderm
Hans et al., 2004	Fig. 5		pax2a	ectoderm
Mathieu et al., 2004	text only		myhz1.1	unspecified
			myod1	unspecified
Scholpp et al., 2004	text only		etv5b	unspecified
Solomon et al., 2004	text only		pax2a	unspecified
Teraoka et al., 2004	text only		epha4a	unspecified
			tph2	unspecified
Tsang et al., 2004	text only		dusp6	unspecified
Wiellette et al., 2004	text only		egr2b	unspecified
			mafba	unspecified
			pax2a	(not) unspecified unspecified
Holzschuh et al., 2003	text only		th	unspecified
Jászai et al., 2003	Fig. 1		pax8	(not) midbrain hindbrain boundary midbrain hindbrain boundary neural rod
			sall1a	(not) midbrain hindbrain boundary neural rod
			spry4	(not) midbrain hindbrain boundary neural rod
	Fig. 2		dmbx1a	midbrain neural rod
			otx2b	midbrain midbrain neural rod
			wnt4	alar plate midbrain region forebrain neural rod
	Fig. 3		aldocb	(not) cerebellum Purkinje cell
			atoh1a	(not) cerebellum
			cntn2	diencephalon
			gap43	(not) cerebellum granule cell
			neurod1	(not) cerebellum granule cell
	Fig. 4		ascl1b	diencephalon
			epha4a	rhombomere 5
			otx2b	midbrain
			shhb	midbrain
			th	(not) locus coeruleus
Tallafuss et al., 2003	text only		fgfr3	unspecified
			her5	unspecified
			otx2b	unspecified
			pax6a	unspecified
			wnt1	unspecified
Lane et al., 2002	Fig. 4		lmo4a	unspecified
Reim et al., 2002	text only		gbx2	(not) unspecified
Winkler et al., 2001	Fig. 6		mdkb	spinal cord
Adamska et al., 2000	Fig. 3		hmx3a	anterior lateral line placode otic vesicle
Durbin et al., 2000	text only		epha4a	unspecified
Reifers et al., 2000	Fig. 1		kdrl	(not) midbrain hindbrain boundary blood vessel
	Fig. 3		gata4	anterior lateral plate mesoderm
			gata6	anterior lateral plate mesoderm
			nkx2.5	heart primordium heart tube
			nkx2.7	lateral plate mesoderm
Shanmugalingam et al., 2000	text only		dlx2a	unspecified
			emx3	unspecified
			hesx1	unspecified
			lhx1a	unspecified
			lhx1b	unspecified
			nkx2.1	unspecified
			ntn1b	unspecified
			pax2a	unspecified
			sema3d	unspecified
			shha	unspecified
			shhb	unspecified
			six3a	unspecified
Guo et al., 1999	Fig. 6		fgf8a	midbrain hindbrain boundary neural keel
			phox2a	hindbrain neural rod ventral region oculomotor nucleus
			th	(not) pharyngeal arch norepinephrine secreting cell
	Fig. 7		fgf8a	midbrain hindbrain boundary neural keel
Heisenberg et al., 1999	Fig. 9		pax2a	(not) midbrain hindbrain boundary
Reifers et al., 1998	Fig. 10		en2a	muscle pioneer
			myod1	adaxial cell mesoderm medial region somite
			pax2a	intermediate mesoderm
			snai1a	tail bud tail bud
	Fig. 11		en1a	pectoral fin bud antero-ventral region
			fgf8a	fin fold pectoral fin bud
			shha	pectoral fin bud posterior margin
	Fig. 5		fgf8a	(not) whole organism
	Fig. 8		en2a	(not) midbrain hindbrain boundary midbrain hindbrain boundary neural keel
			her5	(not) midbrain hindbrain boundary midbrain hindbrain boundary neural keel
			pax2a	hindbrain anterior region midbrain hindbrain boundary neural keel midbrain hindbrain boundary neural keel
Brand et al., 1996	Fig. 8		ascl1a	optic tectum ventricular zone
			pax2a	(not) midbrain posterior region
			wnt1	(not) optic tectum posterior region