ZFIN ID: ZDB-GENE-990415-8

Mapping Details

Gene Name: paired box 2a
Symbol: pax2a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 13 33,160,598 - 33,194,013 GRCz12tu
NCBI Map Viewer 13 33,160,598 - 33,194,013 GRCz12tu
Ensembl 13 29,770,837 - 29,803,764 GRCz11
NCBI Map Viewer 13 29,770,944 - 29,804,357 GRCz11
UCSC 13 - GRCz11
Vega 13 29,640,387 - 29,673,314 GRCv10
Mapped Clones containing pax2a
DKEY-254E7 Chr: 13 Details
CH73-104D2 Chr: 13 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
cu17 13 29,773,189 GRCz11 DIRECT Charlton-Perkins et al., 2019
sa11077 13 33,167,969 GRCz12tu DIRECT Sealy et al., 2025
13 29,778,313 GRCz11 DIRECT Busch-Nentwich et al., 2013
13 29,647,863 GRCz10 DIRECT Busch-Nentwich et al., 2013
13 30,001,915 Zv9 DIRECT Busch-Nentwich et al., 2013
sa22324 13 33,167,970 GRCz12tu DIRECT Sealy et al., 2025
13 29,778,314 GRCz11 DIRECT Busch-Nentwich et al., 2013
13 29,647,864 GRCz10 DIRECT Busch-Nentwich et al., 2013
13 30,001,916 Zv9 DIRECT Busch-Nentwich et al., 2013
sa24936 13 33,167,978 GRCz12tu DIRECT Sealy et al., 2025
13 29,778,322 GRCz11 DIRECT Busch-Nentwich et al., 2013
13 29,647,872 GRCz10 DIRECT Busch-Nentwich et al., 2013
13 30,001,924 Zv9 DIRECT Busch-Nentwich et al., 2013
szu2 13 29,771,465 - 29,771,470 GRCz11 DIRECT Pachoensuk et al., 2020
th44 13 29,778,647 GRCz11 DIRECT Brand et al., 1996
tm243a 13 29,774,007 GRCz11 DIRECT Lun et al., 1998
tu29a 13 29,778,322 GRCz11 DIRECT Lun et al., 1998
ty22b 13 29,778,322 GRCz11 DIRECT Lun et al., 1998
ty31a 13 29,774,023 GRCz11 DIRECT Lun et al., 1998
b593 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
cu17 13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
pax2a_unspecified 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
rk9 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa11077 13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa22324 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa24936 13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
szu2 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
tb21 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
th44 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
tm243a 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
tu29a 13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
tud42Tg 13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
tud43Tg 13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tud53Tg 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
ty22b 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
ty31a 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
umn100 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
umn101 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
uy221Tg 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
13 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
13 102.9 cM paxb Mother of Pearl (MOP) Postlethwait, John H. Data
13 338.43 cR paxb Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
13 2466.0 cR pax2a Goodfellow T51 (T51) Geisler, Robert Data
13 60.7 cM pax2a Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
neurog3 GENE 13 1.3 cM Correa et al., 2005
fgf8a GENE 13 1.3 cM Correa et al., 2005
bmpr1aa GENE 13 2.6 cM Correa et al., 2005
chuk GENE 13 1.3 cM Correa et al., 2005
wnt8b GENE 13 0.1 cM Correa et al., 2005
mgo GENE 13 0.0 cM Shima et al., 2009 Shima et al. (2009) lined the mgo locus to LG13. mgo heterozygous (AB*  ...

OTHER MAPPING INFORMATION: No data available
Genomic Feature sa24936 is an allele of pax2a
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