Genomic Feature
ct801
- ID
- ZDB-ALT-131122-2
- Name
- ct801
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Prober Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 3: 54889515 - 54889524 (GRCz11) (1) Details
- Nucleotide change
- TGGATCTGGC/-
- Variant Notes
-
10bp deletion
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 10 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
TTGAACTAACAATGAACAACTGTATTTTCATTAACTAACGTTAACTGACATCAATAAATACTGTAGTAAATGTACCTTTCATTGTTTGTTCATGTTAGTAAATGCATTAATTAACATTAACTAATGAACCTTATTGTAAAGTGTGACCAAAAATATAATATAAAGTGAAACACTTCAGAATGTGTTTTTGATAAGACATTTACTAATTCATATCCCTTAAAAACGCCCTCGAAACTCCTTAAAGACTTGCGAAGTTCTAGATATAGACATGAGTCAGCGTGTTGATTTGATTGTGATAAAGCTGATAATCTGCAGATAATCTTTTGTTTGTGCTGGTTTGAGGGTCAACTCACCTCTGCTCTTCTCTCCCCGTCTGCAGCGTTTATCTCGGTGTCTGGTGAATGTCCTCTAACCCTTGATGAGGTACTTGTTTTCCTGGGCCAGTGTCCTGAGCTGTCCATGGGCTGGTTCGAAGAGGGGCAGCTGGTGGCCTTCATCAT
TGGATCTGGC/- TGGGATAAAGAGAAACTAGAACAGGTGAGAGGTCATGTGAAGGTGCGTTTAAGTCTTACTTTGGCCAAACTTTGGCTGGAGTAAGATGGTGATGTGCCTTTCGGGAATCAAGTTAATTAACACCTGTGCGCCAGTTAATACATTTTAAGCACTGACTGACATAGACTGCTTTATAAGCATCAGTTCTGACGAGGGCTGCAGGATATTAGGAAAAACAGACATTGCAATGGTTTCTATTTCTGCAATTTATATTGCGATATTAATATAATTTTGATAAGAATTCATAATTTTCCTTTGATTTGGATTTTGTTGGTAAGTTAATCTGCAAAAAAAACAACAACAGAATTGCCCAAATAAAAAATAAAAAATTAGAGAATGGATGGAAACAGCAACACAATGATATAAATTAAATAAACAGCACTTTACGGTTTTTGGTGGTGTATTGAGTTACAGAAATTCAATAATAACTCCGCATGTAGTCTTTATTGTATAAATAAACA - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
aanat2ct801/ct801 | Homozygous | ♀+/- ♂+/- | 5 figures ![]() | ||
aanat2ct801/+ | Heterozygous | ♀+/- ♂+/- | 2 figures ![]() | ||
aanat2ct801/ct801; biu13Tg; nns6Tg | Complex | Fig. 2 from Zada et al., 2019 | |||
aanat2ct801/ct801; g1Tg | Complex | Fig. 3 from Gandhi et al., 2015 | Fig. 3 from Gandhi et al., 2015 | ||
aanat2ct801/+; g1Tg | Complex | Fig. 3 from Gandhi et al., 2015 | Fig. 3 from Gandhi et al., 2015 | ||
aanat1ct823/ct823; aanat2ct801/ct801 | Complex | ||||
aanat2ct801/ct801; tph2ct817/ct817 | Complex | Fig. S3 from Oikonomou et al., 2019 |
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Supplemental Information
- Genotyping protocol
- None
- Oikonomou, G., Altermatt, M., Zhang, R.W., Coughlin, G.M., Montz, C., Gradinaru, V., Prober, D.A. (2019) The Serotonergic Raphe Promote Sleep in Zebrafish and Mice. Neuron. 103(4):686-701.e8
- Zada, D., Bronshtein, I., Lerer-Goldshtein, T., Garini, Y., Appelbaum, L. (2019) Sleep increases chromosome dynamics to enable reduction of accumulating DNA damage in single neurons. Nature communications. 10:895
- Chen, S., Reichert, S., Singh, C., Oikonomou, G., Rihel, J., Prober, D.A. (2017) Light-Dependent Regulation of Sleep and Wake States by Prokineticin 2 in Zebrafish. Neuron. 95(1):153-168.e6
- Singh, C., Rihel, J., Prober, D.A. (2017) Neuropeptide Y Regulates Sleep by Modulating Noradrenergic Signaling. Current biology : CB. 27(24):3796-3811.e5
- Gandhi, A.V., Mosser, E.A., Oikonomou, G., Prober, D.A. (2015) Melatonin Is Required for the Circadian Regulation of Sleep. Neuron. 85(6):1193-9
- Chen, S., Oikonomou, G., Chiu, C.N., Niles, B.J., Liu, J., Lee, D.A., Antoshechkin, I., and Prober, D.A. (2013) A large-scale in vivo analysis reveals that TALENs are significantly more mutagenic than ZFNs generated using context-dependent assembly. Nucleic acids research. 41(4):2769-2778
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