ZFIN ID: ZDB-SSLP-980528-338

Mapping Details

SSLP: z3104
PHYSICAL MAP AND BROWSER No data available
PHYSICAL MAPPING No data available

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
16 43.4 cM z3104 Boston MGH Cross (MGH) Fishman, Mark C. Data
16 75.6 cM z3104 Mother of Pearl (MOP) Postlethwait, John H. Data
16 188.81 cR Z3104 Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
16 48.2 cM z3104 Heat Shock (HS) Woods, Ian G. Data
16 46.4 cM Gates et al (GAT) Talbot, William S. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
ahr1a GENE 16 29.44 cR Hahn, 2005 mapped on the LN54 panel with PCR vectors as indicated:

ahr1a (maps to LG16) 000001010000000000000000000010000001001011011110001100010000001000111110000000010000011001101
ahr1a Linkage group 16, 29.44 cR from Z3104
The best overall marker (in linkage group 16) is linked to the query marker with a LOD of 12.0
The best marker in the second-best linkage group (linkage group 19) is linked to the query marker with a LOD of 3.2

pklr GENE 16 Sharma et al., 2003 Sharma MK et al (Gene 311 (2003), 119-128) mapped the crabp2 gene to LG16 on  ...
cct3 GENE 16 Sharma et al., 2003 Sharma MK et al (Gene 311 (2003), 119-128) mapped the crabp2 gene to LG16 on  ...
khdc4 GENE 16 Sharma et al., 2003 Sharma MK et al (Gene 311 (2003), 119-128) mapped the crabp2 gene to LG16 on  ...
ctssl GENE 16 Sharma et al., 2003 Sharma MK et al (Gene 311 (2003), 119-128) mapped the crabp2 gene to LG16 on  ...
crabp2a GENE 16 7.69 cR Sharma et al., 2003 Sharma MK et al (Gene 311 (2003), 119-128) mapped the crabp2 gene to LG16 on  ...

OTHER MAPPING INFORMATION
Primer Sets:
Strain Bandsize Restriction Enzyme Annealing Temperature [C]
IND 247,0,283 60.0
Forward Primer TCCTTTGGAACAAGAGTGACCG
Reverse Primer CACCAAGCGATATGTTTCCTTT
AB 349,259,339 60.0
Forward Primer TCCTTTGGAACAAGAGTGACCG
Reverse Primer CACCAAGCGATATGTTTCCTTT
TL 251,0 60.0
Forward Primer TCCTTTGGAACAAGAGTGACCG
Reverse Primer CACCAAGCGATATGTTTCCTTT
TU 309,269 60.0
Forward Primer TCCTTTGGAACAAGAGTGACCG
Reverse Primer CACCAAGCGATATGTTTCCTTT
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.