Mapping Details

GENETIC MAPPING PANELS

Chr	Location	Mapped As	Panel	Mapped By	Scoring
5	2.8 cM	z13883	Boston MGH Cross (MGH)	Fishman, Mark C.	Data
5	0.0 cR	Z13883	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
5	59.0 cR	z13883	Goodfellow T51 (T51)	Geisler, Robert	Data
5	0.0 cM	z13883	Heat Shock (HS)	Woods, Ian G.	Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS

Marker	Type	Chr	Distance	Publication / Person	Comments
timm8b	GENE	5		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 11q22-23 to zebrafish LG 5. The genes were mapped using the LN54 RH panel in the order: (btg4, z13883) - timm8b - hspb2- (mirn34b, mirn34c) - cryabb - z23075.
z23075	SSLP	5		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 11q22-23 to zebrafish LG 5. The genes were mapped using the LN54 RH panel in the order: (btg4, z13883) - timm8b - hspb2- (mirn34b, mirn34c) - cryabb - z23075.
btg4	GENE	5	0.0 cR	Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 11q22-23 to zebrafish LG 5. The genes were mapped using the LN54 RH panel in the order: (btg4, z13883) - timm8b - hspb2- (mirn34b, mirn34c) - cryabb - z23075.
hspb2	GENE	5		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 11q22-23 to zebrafish LG 5. The genes were mapped using the LN54 RH panel in the order: (btg4, z13883) - timm8b - hspb2- (mirn34b, mirn34c) - cryabb - z23075.
cryabb	GENE	5		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 11q22-23 to zebrafish LG 5. The genes were mapped using the LN54 RH panel in the order: (btg4, z13883) - timm8b - hspb2- (mirn34b, mirn34c) - cryabb - z23075.
mir34c	MIRNAG	5		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 11q22-23 to zebrafish LG 5. The genes were mapped using the LN54 RH panel in the order: (btg4, z13883) - timm8b - hspb2- (mirn34b, mirn34c) - cryabb - z23075.
mir34b	MIRNAG	5		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 11q22-23 to zebrafish LG 5. The genes were mapped using the LN54 RH panel in the order: (btg4, z13883) - timm8b - hspb2- (mirn34b, mirn34c) - cryabb - z23075.
dcc	GENE	5	12.0 cR	Fricke et al., 2005	Fricke and Chien (2005. Dev. Dyn. 234(3):732-739) reports mapping dcc to LG5, approximately 12cR from z13883, on the LN54 mapping panel.

OTHER MAPPING INFORMATION

Primer Sets:

Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
AB	144,126		60.0
Forward Primer	CCTCCGAGACTGATGAGCTC
Reverse Primer	CTCTGGATCCTCAGCAGGTC
IND	130		60.0
Forward Primer	CCTCCGAGACTGATGAGCTC
Reverse Primer	CTCTGGATCCTCAGCAGGTC
TU	124,0,126		60.0
Forward Primer	CCTCCGAGACTGATGAGCTC
Reverse Primer	CTCTGGATCCTCAGCAGGTC
EKW	0,126		60.0
Forward Primer	CCTCCGAGACTGATGAGCTC
Reverse Primer	CTCTGGATCCTCAGCAGGTC