ZFIN ID: ZDB-GENE-980526-90

Mapping Details

Gene Name:	achaete-scute family bHLH transcription factor 1a
Symbol:	ascl1a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	4	18,005,754 - 18,007,414	GRCz12tu
NCBI Map Viewer	4	18,005,754 - 18,007,414	GRCz12tu
Ensembl	4	17,417,111 - 17,419,193	GRCz11
NCBI Map Viewer	4	17,417,129 - 17,418,789	GRCz11
UCSC	4	-	GRCz11
Vega	4	17,428,135 - 17,430,217	GRCv10

Mapped Clones containing ascl1a
CH211-260P3	Chr: 4 Details
DKEY-264K15	Chr: 4 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
t25215	18		GRCz11	GENERAL_LOAD	load data [singleton]
ascl1a_unspecified	4		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	4		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	4		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
t25215	4		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	4		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	4		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	4		GRCz11	OTHER_MAPPING	linkagesDirectMem1
	4		GRCz11	OTHER_MAPPING	linkagesDirectMem2

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
4	109.6 cM	zasha	Mother of Pearl (MOP)	Postlethwait, John H.	Data
4	211.74 cR	zash-a	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
4	43.07 cM	asha	Gates et al (GAT)	Talbot, William S.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Genomic Feature t25215 is an allele of ascl1a

Marker	Type	Chr	Distance	Publication / Person	Comments
z27201	SSLP	4	0.5 cM	Pogoda et al., 2006	Pogoda et al. (2006, Development 133(6):1079-1089) mapped pia^t25215 to LG4 by segregateion linkage analysis.
z11566	SSLP	4		Pogoda et al., 2006	Pogoda et al. (2006, Development 133(6):1079-1089) mapped pia^t25215 to LG4 by segregateion linkage analysis.

Genomic Feature t25215 is an allele of ascl1a

Chr 18

Herzog et al., 2004

Primer Sets:
Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
SJD	978		36.0
Forward Primer	CAACTTCTGGACGAGCATGA
Reverse Primer	TTCTGAGGGAGGCAAAACC