ZFIN ID: ZDB-GENE-980526-362

Mapping Details

Gene Name:	catenin (cadherin-associated protein), beta 1
Symbol:	ctnnb1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	16	6,407,789 - 6,469,271	GRCz12tu
NCBI Map Viewer	16	6,407,789 - 6,469,271	GRCz12tu
Ensembl	16	6,182,501 - 6,205,790	GRCz11
NCBI Map Viewer	16	6,182,500 - 6,249,214	GRCz11
UCSC	16	-	GRCz11
Vega	16	6,281,340 - 6,304,825	GRCv10

Mapped Clones containing ctnnb1
CH73-49B13	Chr: 16 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa11589	16	6,418,216	GRCz12tu	DIRECT		Sealy et al., 2025
	16	6,192,788	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	6,291,620	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	7,445,782	Zv9	DIRECT		Busch-Nentwich et al., 2013
la019872Tg	16	7,458,556 - 7,458,566	Zv9	ZFIN_Zv9	BurgessLin
hg101	16		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
la019872Tg	16		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa11589	16		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
16	42.2 cM	ctnnb	Mother of Pearl (MOP)	Postlethwait, John H.	Data
16	75.35 cR	IBD2058	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
16	17.6 cM	ctnnb	Heat Shock (HS)	Woods, Ian G.	Data
16	14.58 cM	ctnnb	Gates et al (GAT)	Talbot, William S.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Markers Encoded by ctnnb1
fb73e10 Chr: 16 Details
fi81c06 Chr: 16 Details
fk25h01 Chr: 16 Details

Primer Sets:
Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
SJD	829		36.0
Forward Primer	CAATCAGCTGGCCTGGTTT
Reverse Primer	GCCAAGTCTCCAACCAACAA