ZFIN ID: ZDB-GENE-021206-1

Mapping Details

Gene Name: heat shock 60 protein 1
Symbol: hspd1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN Gbrowse 9 32,286,605 - 32,300,783 GRCz11
Ensembl 9 32,286,605 - 32,300,783 GRCz11
Vega 9 32,475,859 - 32,490,037 GRCv10
NCBI Map Viewer 9 32,286,605 - 32,300,716 GRCz11
UCSC 9 - GRCv10
Mapped Clones containing hspd1
DKEY-83M22 Chr: 9 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
sa11157 9 32,300,533 GRCz11 Busch-Nentwich et al., 2013
9 32,489,787 GRCz10 Busch-Nentwich et al., 2013
9 33,333,841 Zv9 Busch-Nentwich et al., 2013
zp7 9 32,290,967 GRCz11 ZFIN Curated Data
la026911Tg 9 33,333,943 - 33,333,953 Zv9

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
9 458.05 cR IBD2197 Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
hspe1 GENE unknown Martin et al., 2002 Martin, et al. (2002. Genome 45:804-811.) report isolating a single PAC containing the hspd1 and hspe1 genes. The authors use restriction digest analysis and Southern blot analysis to subclone and isolate the region in a plasmid vector. Sequencing the plasmid demonstrates that the two genes are 860bp apart in a head-to-head orientation.

OTHER MAPPING INFORMATION
Chr unknown Martin et al., 2002 Martin, et al. (2002. Genome 45:804-811.) report isolating a single PAC containing the hspd1  ...
Markers Encoded by hspd1
fa04a05 Chr: 9 Details
ibd2197 Chr: 9 Details
Genomic Feature zp7 is an allele of hspd1
Marker Type Chr Distance Publication / Person Comments
z50394 SSLP 9 Makino et al., 2005 Makino, et al. (2005. PNAS 102:14599-14604) reports mapping zp7 to LG9 between z54324 and z50394.
z54324 SSLP 9 Makino et al., 2005 Makino, et al. (2005. PNAS 102:14599-14604) reports mapping zp7 to LG9 between z54324 and z50394.
Genomic Feature zp7 is an allele of hspd1
Chr 9 Makino et al., 2005 Makino, et al. (2005. PNAS 102:14599-14604) reports mapping zp7 to LG9 between z54324 and  ...