ZFIN ID: ZDB-GENE-000509-1

Mapping Details

Gene Name: basic helix-loop-helix ARNT like 1a
Symbol: bmal1a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 25 18,868,817 - 18,895,977 GRCz12tu
NCBI Map Viewer 25 18,868,817 - 18,895,977 GRCz12tu
Ensembl 25 17,893,784 - 17,918,810 GRCz11
NCBI Map Viewer 25 17,893,783 - 17,918,853 GRCz11
UCSC 25 - GRCz11
Vega 25 17,797,384 - 17,822,410 GRCv10
Mapped Clones containing bmal1a
CH211-244M13 Chr: 25 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
ct803 25 17,910,547 - 17,910,607 GRCz11 DIRECT Chen et al., 2013
ihb734 25 17,905,105 - 17,905,108 GRCz11 DIRECT Zebrafish Nomenclature Committee
ihb735 25 17,905,101 - 17,905,110 GRCz11 DIRECT Zebrafish Nomenclature Committee
sa24645 25 18,882,844 GRCz12tu DIRECT Sealy et al., 2025
25 17,907,071 GRCz11 DIRECT Busch-Nentwich et al., 2013
25 17,810,671 GRCz10 DIRECT Busch-Nentwich et al., 2013
25 18,394,361 Zv9 DIRECT Busch-Nentwich et al., 2013
sa38044 25 18,886,302 GRCz12tu DIRECT Sealy et al., 2025
25 17,910,814 GRCz11 DIRECT Busch-Nentwich et al., 2013
25 17,814,414 GRCz10 DIRECT Busch-Nentwich et al., 2013
25 18,398,104 Zv9 DIRECT Busch-Nentwich et al., 2013
ct803 22 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
25 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
ihb734 22 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
25 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
ihb735 25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
22 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
25 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa24645 25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
25 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
22 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa38044 25 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
25 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
22 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
25 246.22 cR bmal1 Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z669 SSLP 22 ZFIN Curated Data While investigating arntl1a (bmal1) gene, bmal1 was found on Sanger ctg15465  ...
z11262 SSLP 22 ZFIN Curated Data While investigating arntl1a (bmal1) gene, bmal1 was found on Sanger ctg15465  ...
z1148 SSLP 22 ZFIN Curated Data While investigating arntl1a (bmal1) gene, bmal1 was found on Sanger ctg15465  ...

OTHER MAPPING INFORMATION
Chr 22 ZFIN Curated Data While investigating arntl1a (bmal1) gene, bmal1 was found on Sanger ctg15465 near SSLP markers  ...
Markers Encoded by bmal1a
fa04g03 Chr: 25 Details
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.
Please check the highlighted fields and try again.
Thank you for submitting comments. Your input has been emailed to ZFIN curators who may contact you if additional information is required.
Oops. Something went wrong. Please try again later.