ZFIN ID: ZDB-GENE-020712-1

Mapping Details

Gene Name: protein associated with LIN7 1, MAGUK p55 family member a
Symbol: pals1a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 17 34,206,167 - 34,239,514 GRCz11
Ensembl 17 34,206,167 - 34,239,514 GRCz11
Vega 17 34,258,221 - 34,291,568 GRCv10
NCBI Map Viewer 17 34,186,632 - 34,242,334 GRCz11
UCSC 17 - GRCz11
Mapped Clones containing pals1a
CH211-37L23 Chr: 17 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
m520 17 34,234,220 GRCz11 ZFIN Curated Data
sa2908 17 34,231,513 GRCz11 Busch-Nentwich et al., 2013
17 34,283,567 GRCz10 Busch-Nentwich et al., 2013
17 34,398,643 Zv9 Busch-Nentwich et al., 2013
sa15209 17 34,231,192 GRCz11 Busch-Nentwich et al., 2013
17 34,283,246 GRCz10 Busch-Nentwich et al., 2013
17 34,398,322 Zv9 Busch-Nentwich et al., 2013
sa36468 17 34,238,792 GRCz11 Busch-Nentwich et al., 2013
17 34,290,846 GRCz10 Busch-Nentwich et al., 2013
17 34,405,922 Zv9 Busch-Nentwich et al., 2013
zju203 17 34,216,069 - 34,216,073 GRCz11 Hao et al., 2020

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z11341 SSLP 17 0.12 cM Wei et al., 2002 Wei and Malicki (2002. Nat Genet 31:150-157.) report mapping nok to LG17 between z11341 and z4332 using half-tetrad analysis and a high resolution F2 mapping panel. A chromosome walk using BAC and PAC clones identified a 55kb region containing nok and was then sequenced. nok is approximately 0.12cM from z11431 and 1.2cM from z4332.
z4332 SSLP 17 1.2 cM Wei et al., 2002 Wei and Malicki (2002. Nat Genet 31:150-157.) report mapping nok to LG17 between z11341 and z4332 using half-tetrad analysis and a high resolution F2 mapping panel. A chromosome walk using BAC and PAC clones identified a 55kb region containing nok and was then sequenced. nok is approximately 0.12cM from z11431 and 1.2cM from z4332.

OTHER MAPPING INFORMATION: No data available
Genomic Feature m227 is an allele of pals1a