| ZFIN ID: ZDB-GENE-990415-101 |
| Gene Name: | homeobox B1a |
|---|---|
| Symbol: | hoxb1a |
PHYSICAL MAP AND BROWSER
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| Mapped Clones containing hoxb1a | |
|---|---|
| DKEY-178D9 | Chr: 3 Details |
| BUSM1-254O17 | Chr: 3 Details |
PHYSICAL MAPPING
| Feature | Chr | Position | Assembly | Source | DetailedSource | Citations |
|---|---|---|---|---|---|---|
| sa1191 | 3 | 22,510,340 | GRCz12tu | DIRECT | Sealy et al., 2025 | |
| 3 | 23,770,481 | GRCz11 | DIRECT | Busch-Nentwich et al., 2013 | ||
| 3 | 23,639,933 | GRCz10 | DIRECT | Busch-Nentwich et al., 2013 | ||
| 3 | 24,061,722 | Zv9 | DIRECT | Busch-Nentwich et al., 2013 | ||
| sa31326 | 3 | 22,510,248 | GRCz12tu | DIRECT | Sealy et al., 2025 | |
| 3 | 23,770,389 | GRCz11 | DIRECT | Busch-Nentwich et al., 2013 | ||
| 3 | 23,639,841 | GRCz10 | DIRECT | Busch-Nentwich et al., 2013 | ||
| 3 | 24,061,630 | Zv9 | DIRECT | Busch-Nentwich et al., 2013 | ||
| sa33162 | 3 | 22,508,808 | GRCz12tu | DIRECT | Sealy et al., 2025 | |
| 3 | 23,768,949 | GRCz11 | DIRECT | Busch-Nentwich et al., 2013 | ||
| 3 | 23,638,401 | GRCz10 | DIRECT | Busch-Nentwich et al., 2013 | ||
| 3 | 24,060,190 | Zv9 | DIRECT | Busch-Nentwich et al., 2013 | ||
| um189 | 3 | 23,768,985 | GRCz11 | DIRECT | Weicksel et al., 2014 | |
| um190 | 3 | 23,768,982 - 23,768,983 | GRCz11 | DIRECT | Weicksel et al., 2014 | |
| um191 | 3 | 23,768,983 - 23,768,988 | GRCz11 | DIRECT | Weicksel et al., 2014 | |
| um192 | 3 | 23,768,983 - 23,768,998 | GRCz11 | DIRECT | Weicksel et al., 2014 | |
| um193 | 3 | 23,768,979 - 23,768,986 | GRCz11 | DIRECT | Weicksel et al., 2014 | |
| um194 | 3 | 23,768,984 - 23,768,988 | GRCz11 | DIRECT | Weicksel et al., 2014 | |
| sa1191 | 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers | ||
| 3 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | |||
| sa31326 | 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers | ||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | |||
| 3 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info | |||
| sa33162 | 3 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info | ||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers | |||
| um189 | 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers | ||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | |||
| 3 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info | |||
| um190 | 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | ||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers | |||
| 3 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info | |||
| um191 | 3 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info | ||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers | |||
| um192 | 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers | ||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | |||
| 3 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info | |||
| um193 | 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | ||
| 3 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | |||
| um194 | 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | ||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | |||
| 3 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers | |||
| 3 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info |
| Chr | Location | Mapped As | Panel | Mapped By | Scoring |
|---|---|---|---|---|---|
| 3 | 2211.0 cR | hoxb1a | Goodfellow T51 (T51) | Geisler, Robert | Data |
| 3 | 44.1 cM | hoxb1a | Heat Shock (HS) | Woods, Ian G. | Data |
| Note: Physical map location as
displayed in the genome browsers is more precise than linkage map location. Physical map location should be used whenever possible. |
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| Marker | Type | Chr | Distance | Publication / Person | Comments |
|---|---|---|---|---|---|
| hoxb2a | GENE | 3 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03. | |
| hoxb3a | GENE | 3 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03. | |
| hoxb4a | GENE | 3 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03. | |
| hoxb6a | GENE | 3 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03. | |
| hoxb8a | GENE | 3 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03. | |
| hoxb9a | GENE | 3 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03. | |
| eve1 | GENE | 3 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03. | |
| hoxb5a | GENE | 3 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03. | |
| hoxb10a | GENE | 3 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03. | |
| hoxb7a | GENE | 3 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03. |
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| Genomic Feature sa31326 is an allele of hoxb1a |