ZFIN ID: ZDB-GENE-980526-52

Mapping Details

Gene Name: paired box 3a
Symbol: pax3a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 2 50,627,899 - 50,680,652 GRCz12tu
NCBI Map Viewer 2 50,627,899 - 50,680,652 GRCz12tu
Ensembl 2 47,379,266 - 47,431,205 GRCz11
NCBI Map Viewer 2 47,372,904 - 47,431,205 GRCz11
UCSC 2 - GRCz11
Vega 2 47,526,762 - 47,578,701 GRCv10
Mapped Clones containing pax3a
DKEY-20F20 Chr: 2 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
ihb872 2 47,429,976 - 47,430,037 GRCz11 DIRECT Zebrafish Nomenclature Committee
ihb873 2 47,429,989 - 47,430,031 GRCz11 DIRECT Zebrafish Nomenclature Committee
sa33020 2 50,679,587 GRCz12tu DIRECT Sealy et al., 2025
2 47,430,140 GRCz11 DIRECT Busch-Nentwich et al., 2013
2 47,577,636 GRCz10 DIRECT Busch-Nentwich et al., 2013
2 47,582,162 Zv9 DIRECT Busch-Nentwich et al., 2013
sa39931 2 50,628,805 GRCz12tu DIRECT Sealy et al., 2025
2 47,380,208 GRCz11 DIRECT Busch-Nentwich et al., 2013
2 47,527,704 GRCz10 DIRECT Busch-Nentwich et al., 2013
2 47,632,094 Zv9 DIRECT Busch-Nentwich et al., 2013
umu5 2 47,430,891 - 47,430,892 GRCz11 DIRECT Nord et al., 2021
la011736Tg 2 47,585,150 - 47,585,160 Zv9 ZFIN_Zv9 BurgessLin
la014990Tg 2 47,596,609 - 47,596,619 Zv9 ZFIN_Zv9 BurgessLin
la014991Tg 2 47,616,719 - 47,616,729 Zv9 ZFIN_Zv9 BurgessLin
ihb872 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
2 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
ihb873 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
la011736Tg 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
la014990Tg 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
2 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
la014991Tg 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa33020 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
2 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa39931 2 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
umu5 2 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
2 176.7 cM pax3 Mother of Pearl (MOP) Postlethwait, John H. Data
2 3933.0 cR pax3 Goodfellow T51 (T51) Geisler, Robert Data
2 115.5 cM pax3 Heat Shock (HS) Woods, Ian G. Data
2 80.51 cM pax3 Gates et al (GAT) Talbot, William S. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
acsl3b GENE 2 Minchin et al., 2008 Minchin, et al. (2008. Dev. Biol. 317(2):508-522.) reports mapping pax3a and  ...

OTHER MAPPING INFORMATION
Chr 2 Minchin et al., 2008 Minchin, et al. (2008. Dev. Biol. 317(2):508-522.) reports mapping pax3a and acsl3 to BAC  ...
Genomic Feature la011736Tg is an allele of pax3a
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