Genomic Feature

ic3023

ID
ZDB-ALT-160817-2
Name
ic3023
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Del Bene Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 9: 288602 - 288611 (GRCz11) (1) Details
Nucleotide change
TTTCATCCAT/-
Variant Notes
homozygotes fail to inflate their swim bladders and die 10 days  ...
frameshift at amino acid 122 and a premature stop codon after 162 of 1033 aa's  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
10 bp deleted (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation: at position 162 (1)
Sequences
Flanking Sequence
TTTCTCCATGTAGATCTCGAAGTAGGAGACCTGAGGGAAACCACACACAGCTAACATCAGACCAGCTTTAATTTATCACCAATGTAAGAAAGCTCTATTACTGAACTAAATGATAAAGCATTAACCTGATTTGACTCTTAAAGGGATTTTACAACCAAAAATCTAAATCTTCTCACACTTAACTGCTAATAAACTTTAACAGCACAGTTTTATTCTTCTGTTGAACACAAGACAAGATATCCTGAAGGATGCTGGACAAAATGATTTTCATAGCAGGAACAAAAACACAGTTGTTTCCCAGTGTATATTCCTTTGTGTTCAACAGAAGAAAAACACTTGGTTCAGAACAAGTGGAGGATGGAGAAATGATGACAGAAGGTGTATTTTTGGTTGAACTGTCCCTTTGAAACTGCAGTTTCAGGCTGGTGCAGCTTATTGTCCTGGGTTTCGGGGATGATGGGACGACTGATCTCTGTGTACCTTGATGTGGAACTCCAGGT
TTTCATCCAT/- GGAGAAGATGTGGTTGAAGATGTCCTCGGCGATGCGGGGAATGATGCCCATCTGCTGCGGGTCGTGAAGGTTTCCCTGATAGCACATCACAGTCAGTGAGATTTCTGAAACTCTGACATTTCTTTAAGTGCAGTTTTATATTAGTGTAATCCAAAGAAATTGAGTTTATTCTAGAGTAGGGTTAAACACGGACCAAAACTGCAAATTAAGAAGTGAAACACAGACATCACAATCTGTGAACAGAAGTAAAACCGCAGTAGTAGATGCACATTAAAAGCCAAATTAAAGTTTTAAGATAGAAGTTGAAGATTAAAGTGTGGAAGCCGTTCTAACATGTTTAATACAGACTGGAGAAAGCCAATCATTCACTATCGTCAAACCAGAGACATTTAACTGACACACTCATCTATTTAGGGGTGACGCAGTGGCACAATAGGGAGTGCTGTCGCCTCACAGCAAGAAGGTCTCTGGTTTGAGTCTCGGCTGGGTCAGTTGGTGTT
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations