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Fig. 3
Mapping procedure in the 6.3 hpf atlas template.
(a) Analyzed embryos: detected nuclei (white), gsc positive cells (red), automated initialization scheme extracting the plane passing through the blastoderm margin (green), bilateral symmetry plane (purple), and referential (⇀a,⇀d,⇀l). (b) Same with the template, detected nuclei in blue. (c) Initialization step aligning the (⇀a,⇀d,⇀l) basis of the analyzed embryo and the template; the yellow arrowhead points to a mismatch refined in (d) through the registration procedure. Scale bar 100 μm.
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