Gene

pdcd11

ID
ZDB-GENE-030131-4076
Name
programmed cell death 11
Symbol
pdcd11 Nomenclature History
Previous Names
  • cb680 (1)
  • im:7148359
  • sb:cb680
  • wu:fc68c10
Type
protein_coding_gene
Location
Chr: 1 Mapping Details/Browsers
Description
Predicted to enable RNA binding activity. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; head; midbrain; musculature system; and segmental plate. Orthologous to human PDCD11 (programmed cell death 11).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
15 figures from 3 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
4 figures from Yang et al., 2020
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
la013704TgTransgenic insertionUnknownUnknownDNA
la028176TgTransgenic insertionUnknownUnknownDNA
sa8601Allele with one point mutationUnknownSplice SiteENU
sa9850Allele with one point mutationUnknownSplice SiteENU
sa10691Allele with one point mutationUnknownPremature StopENU
sa18706Allele with one point mutationUnknownSplice SiteENU
zf3478Allele with one deletionExon 4UnknownCRISPR
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
CRISPR1-pdcd11Yang et al., 2020
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Human Disease
Associated With pdcd11 Human Ortholog
No data available
Associated With pdcd11 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR003029 S1 domain
Domain IPR008847 Suppressor of forked
Domain IPR048058 rRNA biogenesis protein RRP5, S1 domain, eleventh repeat
Domain IPR048059 rRNA biogenesis protein RRP5, S1 domain, first repeat
Family IPR045209 rRNA biogenesis protein Rrp5
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Domain Details Per Protein
Protein Additional Resources Length HAT (Half-A-TPR) repeat Nucleic acid-binding, OB-fold Pentatricopeptide repeat rRNA biogenesis protein Rrp5 rRNA biogenesis protein RRP5, S1 domain, eleventh repeat rRNA biogenesis protein RRP5, S1 domain, first repeat S1 domain Suppressor of forked Tetratricopeptide-like helical domain superfamily
UniProtKB:A0A8M1NCQ8 InterPro 1816
UniProtKB:A0A8M2B6U9 InterPro 1815
UniProtKB:Q502F4 InterPro 409
UniProtKB:Q1ED11 InterPro 1431
UniProtKB:A0AB32TUD9 InterPro 1816
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 1
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA pdcd11-202 (1) Ensembl 5,793 nt
ncRNA pdcd11-002 (1) Ensembl 851 nt
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Interactions and Pathways
No data available
Antibodies
Name Type Antigen Genes Isotype Host Organism Assay Source Citations
Ab1-pdcd11 polyclonal Rabbit
  • IHC
Millipore
2
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Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEYP-80C12ZFIN Curated Data
EncodesESTcb680Thisse et al., 2001
EncodesESTfc68c10
EncodesESTIMAGE:7148359Thisse et al., 2004
EncodesESTwz2288
EncodescDNAMGC:162501ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanPDCD1110
Nucleotide sequence comparison (1)
Citations
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