Genomic Feature

umu5

ID
ZDB-ALT-220203-1
Name
umu5
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one insertion (1)
Protocol
embryos treated with
Lab of Origin
von Hofsten Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 2
Variants
Variant Type
Insertion
Variant Location
Chr 2: 47430891 - 47430892 (GRCz11) (1) Details
Nucleotide change
-/GCACCCCCAAAACTACCCTATAGTGAGTC
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
29 bp inserted in Exon 1 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
CTACATATTTTAATTTTAAAATATATTTCTTAAGTACGTCAATACTGACAATGTTTTTAGAAATAAGATATTTTATAATAAATGCTTTGTACAAAATGTACGTCTAATATTGACTTCCTAAATCTAAACTAAAACTGGTTCACTTCGACTGCATTATGCAGTTTTCTCTGGATTCAGCTTGATTTTCTTTCAATGTAATAAAAAAACTAATTCAGTCATTTTGACGCTTCAAAATAATTAGCTAAATGTAGTTTTTCAGTGTTAGCCTACTGACTAAAATATACTTACTAATTATATACAAATGCTAAATAAATTATAAACAATTAAATATTTTATTAATGTCATTTTCAGTAATGTCATTTCAATAAAATATCCATAAGATTAAATAGGTCTTTAAAAAACAACTTTGTGGATGTATCTAGTAGGCTGTGCTATAGCAAGCTAACACCTTACCCTCCAAGGAATAGCCACCTCTCGGGTAGTTTTGGGGTGGCGTGGGGC
-/GCACCCCCAAAACTACCCTATAGTGAGTC GCATCATCCTGGAAATGCCCCCCGCTAATGCGGTCATATCTCCTCTGCACGAAAAAAGGATGCACGAAGCACTTGATAGAAAAAGTTATCCAAAGAGAAAGCGCTAGTCGTCAAGTGTCAGTGGACTGCCCAAGTATTGAGGTCTTCAGGCGAAAACAAAAAGTCAACTTCAGAAGTCAAACCGTCGCTTCCAGTCCTCTGAAGTTATTCACGGATATCCAGGTTTTCAATCGTGGTTTATCTCAAAGCGGTTTGGAAGATAACACTCTCAAAGCTTGGTTCCGTTGTTGTTGACACACTTGTTGTTGTGGATTGAAACGGTGATCAGTGGCGAAACATTTTATCAGTTGTTGAGTTGTTGGCTCCTTCTGCCCAGCGAGGACTGTGATTGGTCAAAGAGGGAGGATCCAAAGACCTGGGAAAGCCTGCTGATTGGTCTAAATCCTGAAAGTTTCTTATGTTGTGACCTCGGGAGTTCAAGGGGATGTTTCACTGATAACA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
pax3aumu5/umu5HomozygousUnknown2 figures with image from Nord et al., 2021
pax3aumu5/umu5; i150TgComplexFig. 6 with image from Nord et al., 2021
pax3bumu6/umu6; pax3aumu5/umu5Complex4 figures with image from 2 publications3 figures with image from 2 publications
pax3bumu6/umu6; pax3aumu5/umu5; i150TgComplexFig. 6 with image from Nord et al., 2021
pax3bumu6/umu6; pax3aumu5/umu5; i150Tg/i150TgComplex2 figures with image from Kahsay et al., 2022Figure 4 with image from Kahsay et al., 2022
pax7aumu3/umu3; pax3aumu5/umu5Complex2 figures with image from Nord et al., 2021
pax3aumu5/umu5; pax7bumu4/umu4Complex2 figures with image from Nord et al., 2021
pax3bumu6/umu6; pax7aumu3/umu3; pax3aumu5/umu5Complex4 figures with image from Nord et al., 20212 figures with image from Nord et al., 2021
pax3bumu6/umu6; pax3aumu5/umu5; pax7bumu4/umu4Complex3 figures with image from Nord et al., 20212 figures with image from Nord et al., 2021
pax7aumu3/umu3; pax3aumu5/umu5; pax7bumu4/umu4Complex3 figures with image from Nord et al., 20212 figures with image from Nord et al., 2021
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 2 of 2
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