Genomic Feature

inr101

ID
ZDB-ALT-210719-1
Name
inr101
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Bobe Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 22
Variants
Variant Type
Small Deletion
Variant Location
Chr 22: 24734449 - 24735729 (GRCz11) (1) Details
Nucleotide change
GTCACAGTTCAAGTTCTTAGACTTCAAGCATATGGTAGGAAGAGATAAATGACAACACAATACCGGTATGGCTTCTTCAATGATGGTCTTGTCAAAGTTGACATAAGCCACTTCTTGTCCAAATACTTTGAGATAGGCTGATGCTAGTGGTTTATCGGTTGGCAAAGCCTTCCAGTTTGTGAGCTTGAAGAAACAAATCATTTTTAAGTCAGTTTTTTCTTTTTCAATTTTATAATTAAAGTGTAAAATTAAGATACTATGGACATAAAAAAAACTTACTGCTCTCAGTGTACGCTTAATCTTTGTGATACGGTCAGCACTTTCATCTGCAGCAGGAGATTTTAGGAGAGCTTCATGGATTCCTCCAGTTCTCACACCAAACTGTTTTAGAGGAACAATTTAGTGATGCATTTTAAAATTGATTTAAATAGTAAGTCAAATATCTAGTAAGGAAATTTTAGATGGTTCACCTCAATAACATCAGCAGCAGCTCCAGCCAGGTAAGCACGAGCTTTAGCTACAACAGCTCTGGGCAGGATGGTGGCAGCATCATTGATCATATAGGCACTACCAGCAGCTCCAATCATAAGAGGAGCTTAATGGACAAATTTAAAAGATACATTTAAAGAATAAATTTGCAATACTGTATGTCAGACAAATTTTAATGCAGTTTAAGAAACATCCGATATAATTTCTTAGCTCTTAAGAAATTAGAAATTCTTACTATAATAATAGTCCATCTGAAAAGCTCTGCTGTAACGGTAGTTAAGTCTGTCCAGTTTGCGGCTCATAAGCTTGATTGCAACATTAGCTGCACCAGCACTGAAAATAAATAGCCATGATTACCTAGGCTTGTACTCGTTTCATGTGTAAAGTGTGAAAAACATGGAGAATTTAATGTAAAAACACAAAACTGAAATATATTGGCTTTTCTTACACAGATGCCATATCAGGAGCAGTGATTCTGGTCAAGGACTTGATGTGGGAATAGGCAAAGCTTGCAACATGCATGTTTGGCTCAATCCTTAGAGCTCCAGCAAGACTAGAGACAAGTGCCACTGAAGGCTCAGCCTCAAACAGCACAATACAAGCAACCATGCGCACCTCGGGGTGGAGAGCTCTGTCCAAAACAAGCTGCAGGGCAACAGGCTGAACCTGATACAGGAAACAAAGTTTTTTTCATTGGAAGAAAACATGCATAACATTTACAGCAGTTCATATCTAAAATACCTGAATCTTACCAGTTTGGGCTCTTTCTTAGCAATGTTTCTCAGGGCCAAG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
1281 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
TAAGGAGATTCTTTGTAGAATTGTTTTTGTGTACATTAAATCTCATCTGAATGAATTTAGCTGTAAAACTGTACCTTGGTCTAGCTTCAGCTTGGAACTGAACATCAGTCTTCTTTAGTTGCTCATAAGTCATGGACTCCAATTTCTCAGGGAGAGCAGGTGTAATGGTGGCCTGAACTAAAATAATCAACAGAACAACATTAAACCTAAGAAGTGACCCCCATATATTGGAAAATAAGATATGGAAATTCAAAGGCATAGCCGTACCATTGACACTTGCAGCAGCAACTGCAGCAGTGTACCAACTGAACTCCATGGGCACACCAACTGCAGTTGGCAAGATGCGACGCACTTCAGCTGCAAGCAAAGGTTTAGCATACTGGAAGGCAACTCCTTCCTGCAAAGCTTTAAGAGCCTCCTTCAGCAGTGCACGTGGTTTGGGTCCAGTAGCCATCTGAAGAAAGTGTTTATTAGAAGCTTAATTCCAATTGTGAGTATCA
GTCACAGTTCAAGTTCTTAGACTTCAAGCATATGGTAGGAAGAGATAAATGACAACACAATACCGGTATGGCTTCTTCAATGATGGTCTTGTCAAAGTTGACATAAGCCACTTCTTGTCCAAATACTTTGAGATAGGCTGATGCTAGTGGTTTATCGGTTGGCAAAGCCTTCCAGTTTGTGAGCTTGAAGAAACAAATCATTTTTAAGTCAGTTTTTTCTTTTTCAATTTTATAATTAAAGTGTAAAATTAAGATACTATGGACATAAAAAAAACTTACTGCTCTCAGTGTACGCTTAATCTTTGTGATACGGTCAGCACTTTCATCTGCAGCAGGAGATTTTAGGAGAGCTTCATGGATTCCTCCAGTTCTCACACCAAACTGTTTTAGAGGAACAATTTAGTGATGCATTTTAAAATTGATTTAAATAGTAAGTCAAATATCTAGTAAGGAAATTTTAGATGGTTCACCTCAATAACATCAGCAGCAGCTCCAGCCAGGTAAGCACGAGCTTTAGCTACAACAGCTCTGGGCAGGATGGTGGCAGCATCATTGATCATATAGGCACTACCAGCAGCTCCAATCATAAGAGGAGCTTAATGGACAAATTTAAAAGATACATTTAAAGAATAAATTTGCAATACTGTATGTCAGACAAATTTTAATGCAGTTTAAGAAACATCCGATATAATTTCTTAGCTCTTAAGAAATTAGAAATTCTTACTATAATAATAGTCCATCTGAAAAGCTCTGCTGTAACGGTAGTTAAGTCTGTCCAGTTTGCGGCTCATAAGCTTGATTGCAACATTAGCTGCACCAGCACTGAAAATAAATAGCCATGATTACCTAGGCTTGTACTCGTTTCATGTGTAAAGTGTGAAAAACATGGAGAATTTAATGTAAAAACACAAAACTGAAATATATTGGCTTTTCTTACACAGATGCCATATCAGGAGCAGTGATTCTGGTCAAGGACTTGATGTGGGAATAGGCAAAGCTTGCAACATGCATGTTTGGCTCAATCCTTAGAGCTCCAGCAAGACTAGAGACAAGTGCCACTGAAGGCTCAGCCTCAAACAGCACAATACAAGCAACCATGCGCACCTCGGGGTGGAGAGCTCTGTCCAAAACAAGCTGCAGGGCAACAGGCTGAACCTGATACAGGAAACAAAGTTTTTTTCATTGGAAGAAAACATGCATAACATTTACAGCAGTTCATATCTAAAATACCTGAATCTTACCAGTTTGGGCTCTTTCTTAGCAATGTTTCTCAGGGCCAAG/- ATGGCATCAACCTGGACTCTAATGGGCAAAGCATTAGCTGCAGTTCTCAGTCCAGGAAGGAGCTTCATGATTGGCTTAAG  ...
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
vtg1inr101/inr101 (TU)Homozygous♀+/- ♂+/-Fig. 7 from Yilmaz et al., 20192 figures from Yilmaz et al., 2019
vtg1inr101/inr101 (TU)Homozygous♀-/- ♂-/-3 figures from Yilmaz et al., 2019
vtg1inr101/+ (TU)Heterozygous♀+/- ♂+/-Fig. 4 from Yilmaz et al., 2019
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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