FIGURE SUMMARY
Title

Degenerate codon mixing for PCR-based manipulation of highly repetitive sequences

Authors
Ratnayake, D., Newman, M., Lardelli, M.
Source
Full text @ BMC Res. Notes

Generating the putative Q52, Q31 and Q10-GFP constructs using the Tol2-Q80-GFP-v2A-GFP multicistronic reporter construct. a Vector map of the Tol2-Q80-GFP-v2A-GFP construct. b Summary of CAA and CAG degenerate codon usage in this construct. c Chromatograph of the construct depicting the randomly interspaced glutamine coding CAG and CAA triplets. d Schematic illustration of PCR-based exclusion amplification of the Q80-GFP containing construct to generate polyQ constructs with lower numbers of glutamine repeats. e Q80 sequence showing Q52, Q31 and Q10 primer binding sites. f Sequences of primers intended to generate Q52, Q31 and Q10 constructs. g Analytical agarose gel electrophoresis for each of the putative Q80, Q52, Q31 and Q10 vectors using primers flanking the polyQ region. PCR product sizes of ~ 270, ~ 180, ~ 120 and ~ 60 bp for the intended putative Q80, Q52, Q31 and Q10-GFP constructs, respectively, were seen

Vector map and sequence analysis of the constructs coding for Q52, Q21 and Q11-GFP generated by PCR based excision amplification. a Vector map of Tol2-Q52-GFP-v2A-GFP construct. b Chromatograph of the Q52 construct. c Vector map of Tol2-Q21-GFP-v2A-GFP construct. d Chromatograph of the Q21 construct. e Vector map of Tol2-Q11-GFP-v2A-GFP construct. f Chromatograph of the Q11 construct

Analysis of the Tol2-QX-GFP-v2A-GFP construct expression in D. rerio. Zebrafish embryos were injected with 25 ng/µL of the Tol2-QX-GFP-v2A-GFP construct and 25 ng/µL mRNA coding for Tol2 transposase. a Brightfield (top panels) and fluorescent (bottom panels) images of the left side view of zebrafish embryo head and trunk regions expressing Q80, Q52, Q21 and Q11-GFP, ~ 24 hpf. b Brightfield (top panels) and fluorescent (bottom panels) images of the left side view of zebrafish embryo trunk and tail regions expressing Q80, Q52, Q21 and Q11-GFP, ~ 24 hpf. c Western blot analysis of the expression of Qx-GFP constructs in D. rerio. Proteins were isolated from ~ 24 hpf embryos expressing the Q80, Q52, Q21 and Q11-GFP constructs. The proteins were resolved on a 10% SDS-PAGE gel and transferred to a nitrocellulose membrane. The membrane was probed with an anti-GFP antibody. The “empty” Tol2 vector possesses an expressed GFP gene that is replaced during construct insertion. d Western blot quantification. The GFP intensity for each numbered band of the Western blot and the Qx-GFP to free GFP ratio are presented

Acknowledgments
This image is the copyrighted work of the attributed author or publisher, and ZFIN has permission only to display this image to its users. Additional permissions should be obtained from the applicable author or publisher of the image. Full text @ BMC Res. Notes