ZFIN ID: ZDB-LAB-040513-1
Molecular and Functionnal Evolution of Multigenic Families
PI/Director: Casane, Didier
Co-PI / Senior
Researcher:
Borday, Veronique
Laurenti, Patrick
Contact Person: Laurenti, Patrick
Email: patrick.laurenti@legs.cnrs-gif.fr
URL: http://www.cnrs-gif.fr/pge/gde/index.php
Address: Populations, Genetique et Evolution CNRS, UPR9034 Batiment 13 1 avenue de la terrasse Gif-sur-Yvette, 91198 France
Country: France
Phone: +33 (0)1 69 82 37 60 (dial 0 only within France)
Fax: +33 (0)1 69 82 37 36
Line Designation: None assigned


GENOMIC FEATURES ORIGINATING FROM THIS LAB No data available


STATEMENT OF RESEARCH INTERESTS
A large part of the answer to the problem of the diversity of animal form lies in the gene control circuitry, its structure, its functional organisation and its evolution . During evolution, gene duplications - thought to be massive events, even whole genome duplications in vertebrate species lineage for instance - have allowed changes in expression patterns to occur. As changes in pattern formation is of prime importance in the evolution of body plans, there is no doubt that the understanding of the massive gene duplication events, and of the molecular evolution of developmental regulatory systems will have a great impact on our understanding of morphological changes.

We are mainly interested in (1) how genes evolved and (2) what are the links between gene evolution and phenotype. We, as others, adress this questions by means of genetics and molecular biology performed in model organisms such as Zebrafish, Medaka, Xenopus, and Drosphila. However, we are also developing studies on non-model species such as Dogfish (chondrychtyans), in order to benefit from a huge set of ready-made successful genetic experiments: biodiversity.

We focused our attention on two gene-families : the homeotic genes (Hox genes) and distal-less-related (dlx) genes. Both encode multifunctional transcription factors that are involved in a wide array of developmental processes, such as the regionalisation of the body axis, the formation of central nervous system, the development of appendages, the development of teeth and scales... Not only the develoment and physiology of these organs have been well studied by biologists for decades, but also these organs retained the attention of evolutionary biologists and paleontologists because they represent informative steps during the evolution of vertebrates.


LAB MEMBERS
Debiais-Thibaud, Mélanie


ZEBRAFISH PUBLICATIONS OF LAB MEMBERS
Debiais-Thibaud, M., Simion, P., Ventéo, S., Muñoz, D., Marcellini, S., Mazan, S., Haitina, T. (2019) Skeletal mineralisation in association with type X collagen expression is an ancestral feature for jawed vertebrates. Molecular Biology and Evolution. 36(10):2265-2276
Hinaux, H., Blin, M., Fumey, J., Legendre, L., Heuzé, A., Casane, D., Rétaux, S. (2015) Lens defects in Astyanax mexicanus cavefish: evolution of crystallins and a role for alphaA-crystallin. Developmental Neurobiology. 75(5):505-21
MacDonald, R.B., Pollack, J.N., Debiais-Thibaud, M., Heude, E., Talbot, J.C., and Ekker, M. (2013) The ascl1a and dlx genes have a regulatory role in the development of GABAergic interneurons in the zebrafish diencephalon. Developmental Biology. 381(1):276-85
Debiais-Thibaud, M., Metcalfek, C.J., Pollack, J., Germon, I., Ekker, M., Depew, M., Laurenti, P., Borday-Birraux, V., and Casane, D. (2013) Heterogeneous conservation of dlx paralog co-expression in jawed vertebrates. PLoS One. 8(6):e68182
Compagnucci, C., Debiais, M., Coolen, M., Fish, J., Griffin, J.N., Bertocchini, F., Minoux, M., Rijli, F.M., Borday-Birraux, V., Casane, D., Mazan, S., and Depew, M.J. (2013) Pattern and polarity in the development and evolution of the gnathostome jaw: Both conservation and heterotopy in the branchial arches of the shark, Scyliorhinus canicula. Developmental Biology. 377(2):428-48
Hinaux, H., Poulain, J., Da Silva, C., Noirot, C., Jeffery, W.R., Casane, D., and Retaux, S. (2013) De Novo Sequencing of Astyanax mexicanus Surface Fish and Pachon Cavefish Transcriptomes Reveals Enrichment of Mutations in Cavefish Putative Eye Genes. PLoS One. 8(1):e53553
Oulion, S., Laurenti, P., and Casane, D. (2012) Hox genes organization: studying non-model vertebrates leads to a paradigm shift. Med. Sci.. 28(4):350-353
Yu, M., Xi, Y., Pollack, J., Debiais-Thibaud, M., Macdonald, R.B., and Ekker, M. (2011) Activity of dlx5a/dlx6a regulatory elements during zebrafish GABAergic neuron development. International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience. 29(7):681-91
Steele, S.L., Yang, X., Debiais-Thibaud, M., Schwerte, T., Pelster, B., Ekker, M., Tiberi, M., Perry, S.F. (2011) In vivo and in vitro assessment of cardiac {beta}-adrenergic receptors in larval zebrafish (Danio rerio). The Journal of experimental biology. 214(9):1445-1457
Kano, S., Xiao, J.H., Osorio, J., Ekker, M., Hadzhiev, Y., Muller, F., Casane, D., Magdelenat, G., and Retaux, S. (2010) Two lamprey hedgehog genes share non-coding regulatory sequences and expression patterns with gnathostome hedgehogs. PLoS One. 5(10):e13332
Gibert, Y., Bernard, L., Debiais-Thibaud, M., Bourrat, F., Joly, J.S., Pottin, K., Meyer, A., Retaux, S., Stock, D.W., Jackman, W.R., Seritrakul, P., Begemann, G., and Laudet, V. (2010) Formation of oral and pharyngeal dentition in teleosts depends on differential recruitment of retinoic acid signaling. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 24(9):3298-3309
Macdonald, R.B., Debiais-Thibaud, M., Talbot, J.C., and Ekker, M. (2010) The relationship between dlx and gad1 expression indicates highly conserved genetic pathways in the zebrafish forebrain. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(8):2298-2306
MacDonald, R.B., Debiais-Thibaud, M., Martin, K., Poitras, L., Tay, B.H., Venkatesh, B., and Ekker, M. (2010) Functional conservation of a forebrain enhancer from the elephant shark (Callorhinchus milii) in zebrafish and mice. BMC Evolutionary Biology. 10:157
MacDonald, R. B., Debiais-Thibaud, M., Ekker, M. (2010) Regulation of Dlx gene expression in the zebrafish pharyngeal arches: from conserved enhancer sequences to conserved activity. Zeitschrift fur angewandte Ichthyologie = Journal of applied ichthyology. 26(2):187-191
Debiais-Thibaud, M., Germon, I., Laurenti, P., Casane, D., and Borday-Birraux, V. (2008) Low divergence in Dlx gene expression between dentitions of the medaka (Oryzias latipes) versus high level of expression shuffling in osteichtyans. Evolution & development. 10(4):464-476
Debiais-Thibaud, M., Borday-Birraux, V., Germon, I., Bourrat, F., Metcalfe, C.J., Casane, D., and Laurenti, P. (2007) Development of oral and pharyngeal teeth in the medaka (Oryzias latipes): comparison of morphology and expression of eve1 gene. Journal of experimental zoology. Part B, Molecular and developmental evolution. 308(6):693-708
Verreijdt, L., Debiais-Thibaud, M., Borday-Birraux, V., Van der Heyden, C., Sire, J.Y., and Huysseune, A. (2006) Expression of the dlx gene family during formation of the cranial bones in the zebrafish (Danio rerio): Differential involvement in the visceral skeleton and braincase. Developmental Dynamics : an official publication of the American Association of Anatomists. 235(5):1371-1389
Borday-Birraux, V., Van der Heyden, C., Debiais-Thibaud, M., Verreijdt, L., Stock, D.W., Huysseune, A., and Sire, J.Y. (2006) Expression of Dlx genes during the development of the zebrafish pharyngeal dentition: evolutionary implications. Evolution & development. 8(2):130-141
Laurenti, P., Thaëron, C., Allizard, F., Huysseune, A., and Sire, J.Y. (2004) Cellular expression of eve1 suggests its requirement for the differentiation of the ameloblasts and for the initiation and morphogenesis of the first tooth in the zebrafish (Danio rerio). Developmental Dynamics : an official publication of the American Association of Anatomists. 230(4):727-733
Géraudie, J., and Borday-Birraux, V. (2003) Posterior hoxa genes expression during zebrafish bony fin ray development and regeneration suggests their involvement in scleroblast differentiation. Development genes and evolution. 213(4):182-186
Avaron, F., Thäron-Antono, C., Beck, C.W., Borday-Birraux, V., Géraudie, J., Casane, D., and Laurenti, P. (2003) Comparison of even-skipped related gene expression pattern in vertebrates shows an association between expression domain loss and modification of selective constraints on sequences. Evolution & development. 5(2):145-156
Borday, V., Thaëron, C., Avaron, F., Brulfert, A., Casane, D., Laurenti, P., and Géraudie, J. (2001) evx1 transcription in bony fin rays segment boundaries leads to a reiterated pattern during zebrafish fin development and regeneration. Developmental Dynamics : an official publication of the American Association of Anatomists. 220(2):91-98
Thaëron, C., Avaron, F., Casane, D., Borday, V., Thisse, B., Thisse, C., Boulekbache, H., and Laurenti, P. (2000) Zebrafish evx1 is dynamically expressed during embryogenesis in subsets of interneurones, posterior gut and urogenital system. Mechanisms of Development. 99(1-2):167-172