Mapping Details

GENETIC MAPPING PANELS

Chr	Location	Mapped As	Panel	Mapped By	Scoring
5	52.9 cM	z8122	Boston MGH Cross (MGH)	Fishman, Mark C.	Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS

Marker	Type	Chr	Distance	Publication / Person	Comments
fras1	GENE	5		Carney et al., 2010
z6981	SSLP	5		Carney et al., 2010
tm95b	Feature	5		Carney et al., 2010
b1130	Feature	5		Carney et al., 2010
b1048	Feature	5		Carney et al., 2010
te262d	Feature	5		Carney et al., 2010
ins	GENE	5		Rajarao et al., 2002	Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
dmrt2a	GENE	5		Rajarao et al., 2002	Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
atp1b2b	GENE	5		Rajarao et al., 2002	Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
epd	GENE	5		Rajarao et al., 2002	Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
zehn1245	EST	5		Rajarao et al., 2002	Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
apoa1a	GENE	5		Rajarao et al., 2002	Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.

OTHER MAPPING INFORMATION

Chr 5 Rajarao et al., 2002 Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to  ... Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.   Chr 5 Carney et al., 2010

Primer Sets:

Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
IND	263,251		60.0
Forward Primer	CTCATGGCAGCCCACTATTT
Reverse Primer	TTGTCTGCAGGTCGTGTCTC
AB	0,259		60.0
Forward Primer	CTCATGGCAGCCCACTATTT
Reverse Primer	TTGTCTGCAGGTCGTGTCTC
EKW	257,0,251		60.0
Forward Primer	CTCATGGCAGCCCACTATTT
Reverse Primer	TTGTCTGCAGGTCGTGTCTC
TU	261,0,279,257		60.0
Forward Primer	CTCATGGCAGCCCACTATTT
Reverse Primer	TTGTCTGCAGGTCGTGTCTC