ZFIN ID: ZDB-GENE-030116-3

ZFIN ID: ZDB-GENE-030116-3

Mapping Details

Gene Name:	sec1 family domain containing 1
Symbol:	scfd1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	17	30,272,148 - 30,298,686	GRCz12tu
NCBI Map Viewer	17	30,272,148 - 30,298,686	GRCz12tu
Ensembl	17	28,771,028 - 28,797,395	GRCz11
NCBI Map Viewer	17	28,771,027 - 28,797,395	GRCz11
UCSC	17	-	GRCz11
Vega	17	28,754,065 - 28,780,432	GRCv10

Mapped Clones containing scfd1
DKEY-18B8	Chr: 17 Details
BUSM1-234G15	Chr: 17 Details
BUSM1-67D8	Chr: 17 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa23100	17	30,288,076	GRCz12tu	DIRECT		Sealy et al., 2025
	17	28,786,863	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	17	28,769,900	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	17	28,845,973	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa23101	17	30,294,868	GRCz12tu	DIRECT		Sealy et al., 2025
	17	28,793,568	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	17	28,776,605	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	17	28,852,678	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa42952	17	30,278,886	GRCz12tu	DIRECT		Sealy et al., 2025
	17	28,777,777	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	17	28,760,814	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	17	28,836,887	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa42953	17	30,294,753	GRCz12tu	DIRECT		Sealy et al., 2025
	17	28,793,453	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	17	28,776,490	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	17	28,852,563	Zv9	DIRECT		Busch-Nentwich et al., 2013
vcc43	17	28,788,987	GRCz11	DIRECT		Huttner et al., 2023
vcc44	17	28,789,025 - 28,789,035	GRCz11	DIRECT		Huttner et al., 2023
zp2	17	28,793,363	GRCz11	DIRECT		Nechiporuk et al., 2003
nju201Gt	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
sa23100	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa23101	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sa42952	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa42953	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
vcc43	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
vcc44	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
zp2	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
17	74.2 cM	sly1	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Publication / Person	Comments
z9818	SSLP	17	Nechiporuk et al., 2003	Nechiporuk et al. (Dev. Biol. 258:291-306) reported that the SSLP Z22016 was non-recombinant in 1582 backcrossed progeny. In addition, the authors reported that emm mapped 0.19 cM from SSCP 67d8t7 and 0.06 cM from SSCP 142b24sp6. PAC clones were used to map emm, and the authors reported that the following transcripts were located near emm: pie, COL12A1, SG2NA, and AP4S1.
z22016	SSLP	17	Nechiporuk et al., 2003	Nechiporuk et al. (Dev. Biol. 258:291-306) reported that the SSLP Z22016 was non-recombinant in 1582 backcrossed progeny. In addition, the authors reported that emm mapped 0.19 cM from SSCP 67d8t7 and 0.06 cM from SSCP 142b24sp6. PAC clones were used to map emm, and the authors reported that the following transcripts were located near emm: pie, COL12A1, SG2NA, and AP4S1.
z1278	SSLP	17	Nechiporuk et al., 2003	Nechiporuk et al. (Dev. Biol. 258:291-306) reported that the SSLP Z22016 was non-recombinant in 1582 backcrossed progeny. In addition, the authors reported that emm mapped 0.19 cM from SSCP 67d8t7 and 0.06 cM from SSCP 142b24sp6. PAC clones were used to map emm, and the authors reported that the following transcripts were located near emm: pie, COL12A1, SG2NA, and AP4S1.

Chr 17

Nechiporuk et al., 2003

Nechiporuk et al. (Dev. Biol. 258:291-306) reported that the SSLP Z22016 was non-recombinant in ...