ZFIN ID: ZDB-GENE-020905-1

Mapping Details

Gene Name: ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1
Symbol: atp2a1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 3 24,881,604 - 24,891,048 GRCz12tu
NCBI Map Viewer 3 24,881,604 - 24,891,048 GRCz12tu
Ensembl 3 26,081,343 - 26,157,066 GRCz11
NCBI Map Viewer 3 26,145,034 - 26,154,478 GRCz11
UCSC 3 - GRCz11
UCSC 3 - GRCz11
UCSC 3 - GRCz11
Vega 3 25,950,472 - 26,026,195 GRCv10
Mapped Clones containing atp2a1
CH211-11K18 Chr: 3 Details
CH73-46H18 Chr: 3 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
dta5 3 26,152,109 GRCz11 DIRECT Olson et al., 2010
mi25i 3 26,147,472 GRCz11 DIRECT Hirata et al., 2004
mi289a 3 26,153,429 GRCz11 DIRECT Hirata et al., 2004
sa10632 3 24,889,853 GRCz12tu DIRECT Sealy et al., 2025
3 26,153,283 GRCz11 DIRECT Busch-Nentwich et al., 2013
3 26,022,412 GRCz10 DIRECT Busch-Nentwich et al., 2013
3 26,881,824 Zv9 DIRECT Busch-Nentwich et al., 2013
sa16659 3 24,888,234 GRCz12tu DIRECT Sealy et al., 2025
3 26,151,664 GRCz11 DIRECT Busch-Nentwich et al., 2013
3 26,020,793 GRCz10 DIRECT Busch-Nentwich et al., 2013
3 26,883,443 Zv9 DIRECT Busch-Nentwich et al., 2013
sa17743 3 24,888,764 GRCz12tu DIRECT Sealy et al., 2025
3 26,152,194 GRCz11 DIRECT Busch-Nentwich et al., 2013
3 26,021,323 GRCz10 DIRECT Busch-Nentwich et al., 2013
3 26,882,913 Zv9 DIRECT Busch-Nentwich et al., 2013
tq206 3 26,152,955 GRCz11 DIRECT Hirata et al., 2004
dta5 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
mi25i 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
mi289a 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa10632 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa16659 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa17743 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tc249a 3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
ti284a 3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
tm286 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
tn218b 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tp72x 3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tq206 3 GRCz11 OTHER_MAPPING paneledMarkersDirect
3 GRCz11 OTHER_MAPPING directMappedMarker
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING linkagesDirectMem1
3 GRCz11 OTHER_MAPPING linkagesDirectMem2
ty20 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
3 46.5 cM atp2a1 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
ntn1b GENE 3 4.3 cR Hirata et al., 2004
z4161 SSLP 3 Hirata et al., 2004
tq206 Feature 3 Hirata et al., 2004

OTHER MAPPING INFORMATION
Markers Encoded by atp2a1
fb17h11 Chr: 3 Details
fb19b10 Chr: 3 Details
Genomic Feature tq206 is an allele of atp2a1
Chr Location Mapped As Panel Mapped By Scoring
3 52.3 cM tq206 Boston MGH Cross (MGH) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
Genomic Feature tq206 is an allele of atp2a1
Marker Type Chr Distance Publication / Person Comments
z4161 SSLP 3 6.8 cM Hirata et al., 2004
ntn1b GENE 3 0.2 cM Hirata et al., 2004
fc25e04 EST 3 0.06 cM Gleason et al., 2004 Gleason et al. (2004.Dev. Biol. 276:441-451) reports mapping acc to LG3  ...
z20966 SSLP 3 1.2 cM Gleason et al., 2004 Gleason et al. (2004.Dev. Biol. 276:441-451) reports mapping acc to LG3  ...
z10805 SSLP 3 1.4 cM Gleason et al., 2004 Gleason et al. (2004.Dev. Biol. 276:441-451) reports mapping acc to LG3  ...
z9257 SSLP 3 1.5 cM Gleason et al., 2004
z10934 SSLP 3 6.1 cM Gleason et al., 2004
atp2a1 GENE 3 Hirata et al., 2004
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