ZFIN ID: ZDB-GENE-000823-6

Mapping Details

Gene Name: homeobox B5b
Symbol: hoxb5b
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 12 28,942,782 - 28,944,859 GRCz12tu
NCBI Map Viewer 12 28,942,782 - 28,944,859 GRCz12tu
Ensembl 12 27,129,659 - 27,131,735 GRCz11
NCBI Map Viewer 12 27,129,659 - 27,131,735 GRCz11
UCSC 12 - GRCz11
Vega 12 27,038,299 - 27,040,375 GRCv10
Mapped Clones containing hoxb5b
BUSM1-227H09 Chr: 12 Details
DKEY-11C5 Chr: 12 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
hza5 12 27,130,210 - 27,130,213 GRCz11 DIRECT Zebrafish Nomenclature Committee
12 27,130,210 - 27,130,213 GRCz11 DIRECT Zhang et al., 2020
sa42041 12 28,944,065 GRCz12tu DIRECT Sealy et al., 2025
12 27,130,942 GRCz11 DIRECT Busch-Nentwich et al., 2013
12 27,039,582 GRCz10 DIRECT Busch-Nentwich et al., 2013
12 28,701,973 Zv9 DIRECT Busch-Nentwich et al., 2013
sud136 12 27,130,268 - 27,130,291 GRCz11 DIRECT Maeno et al., 2024
fh478 12 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
12 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
12 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
12 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
hza5 12 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
12 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
12 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
12 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa42041 12 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
12 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
12 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
12 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sud136 12 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
12 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
12 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
12 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
12 225.17 cR IBD2566 Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
12 3465.0 cR hoxb5b Goodfellow T51 (T51) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
hoxb6b GENE 12 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxb8b, hoxb6b, hoxb5b, and hoxb1b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG12.
hoxb1b GENE 12 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxb8b, hoxb6b, hoxb5b, and hoxb1b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG12.
hoxb8b GENE 12 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxb8b, hoxb6b, hoxb5b, and hoxb1b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG12.
mir10a MIRNAG 12 Woltering et al., 2006 Woltering and Durston (2006, Nat. Genet. 38(6):601-602) have mapped mirn10a between hoxb1b and hoxb5b.
hoxb1b GENE 12 Woltering et al., 2006 Woltering and Durston (2006, Nat. Genet. 38(6):601-602) have mapped mirn10a between hoxb1b and hoxb5b.

OTHER MAPPING INFORMATION
Chr 12 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxb8b,  ...
Chr 12 Woltering et al., 2006 Woltering and Durston (2006, Nat. Genet. 38(6):601-602) have mapped mirn10a between  ...