| ZFIN ID: ZDB-GENE-000823-6 |
| Gene Name: | homeobox B5b |
|---|---|
| Symbol: | hoxb5b |
PHYSICAL MAP AND BROWSER
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| Mapped Clones containing hoxb5b | |
|---|---|
| BUSM1-227H09 | Chr: 12 Details |
| DKEY-11C5 | Chr: 12 Details |
PHYSICAL MAPPING
| Feature | Chr | Position | Assembly | Source | DetailedSource | Citations |
|---|---|---|---|---|---|---|
| hza5 | 12 | 27,130,210 - 27,130,213 | GRCz11 | DIRECT | Zebrafish Nomenclature Committee | |
| 12 | 27,130,210 - 27,130,213 | GRCz11 | DIRECT | Zhang et al., 2020 | ||
| sa42041 | 12 | 28,944,065 | GRCz12tu | DIRECT | Sealy et al., 2025 | |
| 12 | 27,130,942 | GRCz11 | DIRECT | Busch-Nentwich et al., 2013 | ||
| 12 | 27,039,582 | GRCz10 | DIRECT | Busch-Nentwich et al., 2013 | ||
| 12 | 28,701,973 | Zv9 | DIRECT | Busch-Nentwich et al., 2013 | ||
| sud136 | 12 | 27,130,268 - 27,130,291 | GRCz11 | DIRECT | Maeno et al., 2024 | |
| fh478 | 12 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | ||
| 12 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers | |||
| 12 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info | |||
| 12 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | |||
| hza5 | 12 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info | ||
| 12 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers | |||
| 12 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | |||
| 12 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | |||
| sa42041 | 12 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers | ||
| 12 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | |||
| 12 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | |||
| 12 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info | |||
| sud136 | 12 | GRCz11 | OTHER_MAPPING | Feature location obtained from related gene that has mapped_marker info | ||
| 12 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneGBrowse | |||
| 12 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGeneLinkage | |||
| 12 | GRCz11 | OTHER_MAPPING | featureLocationPullThruFromGenePaneledMarkers |
| Chr | Location | Mapped As | Panel | Mapped By | Scoring |
|---|---|---|---|---|---|
| 12 | 225.17 cR | IBD2566 | Loeb/NIH/5000/4000 (LN54) | Dawid, Igor B. | Data |
| 12 | 3465.0 cR | hoxb5b | Goodfellow T51 (T51) | Geisler, Robert | Data |
| Note: Physical map location as
displayed in the genome browsers is more precise than linkage map location. Physical map location should be used whenever possible. |
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| Marker | Type | Chr | Distance | Publication / Person | Comments |
|---|---|---|---|---|---|
| hoxb6b | GENE | 12 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxb8b, hoxb6b, hoxb5b, and hoxb1b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG12. | |
| hoxb1b | GENE | 12 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxb8b, hoxb6b, hoxb5b, and hoxb1b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG12. | |
| hoxb8b | GENE | 12 | Amores et al., 1998 | Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxb8b, hoxb6b, hoxb5b, and hoxb1b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG12. | |
| mir10a | MIRNAG | 12 | Woltering et al., 2006 | Woltering and Durston (2006, Nat. Genet. 38(6):601-602) have mapped mirn10a between hoxb1b and hoxb5b. | |
| hoxb1b | GENE | 12 | Woltering et al., 2006 | Woltering and Durston (2006, Nat. Genet. 38(6):601-602) have mapped mirn10a between hoxb1b and hoxb5b. |
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