ZFIN ID: ZDB-GENE-000822-1

Mapping Details

Gene Name: homeobox C6b
Symbol: hoxc6b
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 11 2,198,831 - 2,204,754 GRCz11
Ensembl 11 2,198,831 - 2,204,754 GRCz11
Vega 11 2,099,938 - 2,107,059 GRCv10
NCBI Map Viewer 11 2,198,433 - 2,204,754 GRCz11
UCSC 11 - GRCv10
UCSC 11 - GRCv10
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
sa21828 11 2,203,878 GRCz11 Busch-Nentwich et al., 2013
11 2,101,858 GRCz10 Busch-Nentwich et al., 2013
11 2,149,405 Zv9 Busch-Nentwich et al., 2013
sud124a 11 2,203,167 - 2,203,170 GRCz11 Yamada et al., 2021

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
11 68.35 cR Hoxy6 Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
hoxc11b GENE 11 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, hoxc12b, hoxc11b, and hoxc6b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG11.
hoxc13b GENE 11 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, hoxc12b, hoxc11b, and hoxc6b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG11.
hoxc12b GENE 11 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, hoxc12b, hoxc11b, and hoxc6b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG11.
hoxc11b GENE 11 Yekta et al., 2004 Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196a.2b between hoxc6b and hoxc11b.
mir196c MIRNAG 11 Yekta et al., 2004 Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196a.2b between hoxc6b and hoxc11b.

OTHER MAPPING INFORMATION
Chr 11 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b,  ...
Chr 11 Yekta et al., 2004 Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196a.2b between hoxc6b and  ...
Markers Encoded by hoxc6b
wz12007 Chr: 11 Details