ZFIN ID: ZDB-GENE-000329-5

ZFIN ID: ZDB-GENE-000329-5

Mapping Details

Gene Name:	notch receptor 3
Symbol:	notch3

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	3	56,055,121 - 56,088,529	GRCz12tu
NCBI Map Viewer	3	56,055,121 - 56,088,529	GRCz12tu
Ensembl	3	53,529,714 - 53,559,408	GRCz11
NCBI Map Viewer	3	53,529,714 - 53,559,408	GRCz11
UCSC	3	Based on NM_131549	GRCz11
Vega	3	53,275,051 - 53,304,745	GRCv10

Mapped Clones containing notch3
CH211-69E21	Chr: 3 Details
DKEY-18G4	Chr: 3 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
fh332	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
fh334	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
ion36h	3	56,060,380 - 56,060,387	GRCz12tu	ZFIN	ZFIN Curated Data
	3	53,534,976 - 53,534,983	GRCz11	Direct Data Submission	Jin et al., 2022
ip14Tg	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
la010071Tg	3	56,081,583 - 56,081,593	GRCz12tu	Direct Data Submission
	3	54,190,525 - 54,190,535	Zv9	ZFIN Zv9 GBrowse
la015265Tg	3	56,081,321 - 56,081,331	GRCz12tu	Direct Data Submission
	3	54,190,263 - 54,190,273	Zv9	ZFIN Zv9 GBrowse
la024295Tg	3	56,081,469 - 56,081,479	GRCz12tu	Direct Data Submission
	3	54,190,411 - 54,190,421	Zv9	ZFIN Zv9 GBrowse
la028945Tg	3	56,081,395 - 56,081,405	GRCz12tu	Direct Data Submission
	3	54,190,337 - 54,190,347	Zv9	ZFIN Zv9 GBrowse
notch3_unrecovered	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
sa14943	3	56,071,265	GRCz12tu	Direct Data Submission	Sealy et al., 2025
	3	53,542,223	GRCz11	Direct Data Submission	Busch-Nentwich et al., 2013
	3	53,287,560	GRCz10	Direct Data Submission	Busch-Nentwich et al., 2013
	3	54,180,245	Zv9	Direct Data Submission	Busch-Nentwich et al., 2013
sa16743	3	56,069,729	GRCz12tu	Direct Data Submission	Sealy et al., 2025
	3	53,540,666	GRCz11	Direct Data Submission	Busch-Nentwich et al., 2013
	3	53,286,003	GRCz10	Direct Data Submission	Busch-Nentwich et al., 2013
	3	54,178,688	Zv9	Direct Data Submission	Busch-Nentwich et al., 2013
sa20147	3	56,059,993	GRCz12tu	Direct Data Submission	Sealy et al., 2025
	3	53,534,589	GRCz11	Direct Data Submission	Busch-Nentwich et al., 2013
	3	53,279,926	GRCz10	Direct Data Submission	Busch-Nentwich et al., 2013
	3	54,172,611	Zv9	Direct Data Submission	Busch-Nentwich et al., 2013
sa33320	3	56,059,545	GRCz12tu	Direct Data Submission	Sealy et al., 2025
	3	53,534,145	GRCz11	Direct Data Submission	Busch-Nentwich et al., 2013
	3	53,279,482	GRCz10	Direct Data Submission	Busch-Nentwich et al., 2013
	3	54,172,167	Zv9	Direct Data Submission	Busch-Nentwich et al., 2013
sa33321	3	56,088,252	GRCz12tu	Direct Data Submission	Sealy et al., 2025
	3	53,559,131	GRCz11	Direct Data Submission	Busch-Nentwich et al., 2013
	3	53,304,468	GRCz10	Direct Data Submission	Busch-Nentwich et al., 2013
	3	54,197,153	Zv9	Direct Data Submission	Busch-Nentwich et al., 2013
sa40169	3	53,534,567	GRCz11	Direct Data Submission	Busch-Nentwich et al., 2013
	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
	3	53,279,904	GRCz10	Direct Data Submission	Busch-Nentwich et al., 2013
	3	54,172,589	Zv9	Direct Data Submission	Busch-Nentwich et al., 2013
st51	3		GRCz11	General Load
	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
zm197263Tg	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping
	3		GRCz11	Other Mapping

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
3	146.1 cM	notch3	Mother of Pearl (MOP)	Postlethwait, John H.	Data
3	147.3 cM	notch5_sum	Mother of Pearl (MOP)	Postlethwait, John H.	Data
3	82.0 cM	notch3	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Genomic Feature st51 is an allele of notch3

Chr 3

Pogoda et al., 2006

As stated by Pogoda et al (2006), mutations were mapped to linkage groups by bulked segregant ...