ZFIN ID: ZDB-GENE-020129-1

ZFIN ID: ZDB-GENE-020129-1

Mapping Details

Gene Name:	calcium channel, voltage-dependent, L type, alpha 1C subunit
Symbol:	cacna1c

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN JBrowse	4	20,904,022 - 21,075,241	GRCz12tu
NCBI Map Viewer	4	20,904,022 - 21,075,241	GRCz12tu
Ensembl	4	20,318,127 - 20,474,972	GRCz11
NCBI Map Viewer	4	20,308,987 - 20,480,303	GRCz11
UCSC	4	-	GRCz11
Vega	4	20,597,152 - 20,753,997	GRCv10

Mapped Clones containing cacna1c
CH211-87P6	Chr: 4 Details
DKEY-65M5	Chr: 4 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
a366	4	20,372,569 - 20,372,571	GRCz11	Zebrafish Nomenclature Committee
	4	20,372,569 - 20,372,571	GRCz11	Zebrafish Nomenclature Committee
	4	20,372,569 - 20,372,571	GRCz11	Thyme et al., 2019
biz102	4	20,372,424 - 20,372,428	GRCz11	Pluimer et al., 2023
sa6050	4	20,436,120	GRCz11	Busch-Nentwich et al., 2013
	4	20,715,145	GRCz10	Busch-Nentwich et al., 2013
	4	19,371,810	Zv9	Busch-Nentwich et al., 2013
sa6943	4	20,446,938	GRCz11	Busch-Nentwich et al., 2013
	4	20,725,963	GRCz10	Busch-Nentwich et al., 2013
	4	19,382,628	Zv9	Busch-Nentwich et al., 2013
sa10930	4	20,436,045	GRCz11	Busch-Nentwich et al., 2013
	4	20,715,070	GRCz10	Busch-Nentwich et al., 2013
	4	19,371,735	Zv9	Busch-Nentwich et al., 2013
sa15296	4	20,464,942	GRCz11	Busch-Nentwich et al., 2013
	4	20,743,967	GRCz10	Busch-Nentwich et al., 2013
	4	19,400,632	Zv9	Busch-Nentwich et al., 2013
sa38439	4	20,452,012	GRCz11	Busch-Nentwich et al., 2013
	4	20,731,037	GRCz10	Busch-Nentwich et al., 2013
	4	19,387,702	Zv9	Busch-Nentwich et al., 2013
sa40287	4	20,447,953	GRCz11	Busch-Nentwich et al., 2013
	4	20,726,978	GRCz10	Busch-Nentwich et al., 2013
	4	19,383,643	Zv9	Busch-Nentwich et al., 2013
sa44588	4	20,447,415	GRCz11	Busch-Nentwich et al., 2013
	4	20,726,440	GRCz10	Busch-Nentwich et al., 2013
	4	19,383,105	Zv9	Busch-Nentwich et al., 2013
la015364Tg	4	19,361,020 - 19,361,030	Zv9
a366	4		GRCz11
	4		GRCz11
biz102	4		GRCz11
	4		GRCz11
la015364Tg	4		GRCz11
	4		GRCz11
m231	4		GRCz11
	4		GRCz11
m379	4		GRCz11
	4		GRCz11
m458	4		GRCz11
	4		GRCz11
sa6050	4		GRCz11
	4		GRCz11
sa6943	4		GRCz11
	4		GRCz11
sa10930	4		GRCz11
	4		GRCz11
sa15296	4		GRCz11
	4		GRCz11
sa38439	4		GRCz11
	4		GRCz11
sa40287	4		GRCz11
	4		GRCz11
sa44588	4		GRCz11
	4		GRCz11
uab449	4		GRCz11
	4		GRCz11

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z11566	SSLP	4		Rottbauer et al., 2001	Using bulked segregant analysis and finer genetic mapping, Rottbauer, et al. (2001. Dev Cell 1:265-275.) report mapping cacna1c to LG04 in the ~0.6cM interval between z11657 and z11566. A physical map of this region was generated using YACs and BACs.
z11657	SSLP	4		Rottbauer et al., 2001	Using bulked segregant analysis and finer genetic mapping, Rottbauer, et al. (2001. Dev Cell 1:265-275.) report mapping cacna1c to LG04 in the ~0.6cM interval between z11657 and z11566. A physical map of this region was generated using YACs and BACs.

Chr 4

Rottbauer et al., 2001

Using bulked segregant analysis and finer genetic mapping, Rottbauer, et al. (2001. Dev Cell ...

Genomic Feature biz102 is an allele of cacna1c