Genomic Feature
udm301
- ID
- ZDB-ALT-200219-4
- Name
- udm301
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one delins (1)
- Protocol
- embryos treated with
- Lab of Origin
- Samarut Lab
- Current Source
- Other Pages
Notes
| Comment | Citation |
|---|---|
| Loss-of-function allele. Indel in exon 4 results in a premature stop codon ... | Riché et al., 2018 |
Variants
- Variant Type
- Delins
- Variant Location
- Chr 5: 66177374 - 66177383 (GRCz11) (1) Details
- Nucleotide change
- CAGCCCGAGG/AATAC
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 5 bp inserted / 10 bp deleted in Exon 4 (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation: Met>Stop at position 189 (1)
- Flanking Sequence
-
TTAAATTTGGTCTGTCTTGATTTTTCCTGTTTATTATTTTATTTAAAATTTCCCCCCGACATATTAATTTGGGGGTACTTAATACCATCATTTTTAAGAAGTTGTTTTTCCTACTATGGAAGTCGGTGGTTACATGATTTCAACTTTCTTCAAAATATCTTCATTTGTGTTCAGCAGAATAAAGAAACTCAGAGATAAATAGTGAGTAAATGTATTATTTTTGTGTGAACTGTCCCTTTAAACTCAATACTAGTGTCTCGCAAAATACCGGAAGAAATCCACGCCAACGCGGGGAGAACATGCAAAAGCCACACAGAAATGCCAACTGACCAAAACCAGTGACCTTCTTGCTGTGAGGCCACTGTGTCGCCAGAATTGCATTTAATTTTTATTATTATTACTTTTATTATTACATATAGGAGTAGCATGGCTTAATGTCTTAAATTAGTGCTTCAGTGAGTATTTGTGTTCTCTACAGGGTGACCCAATACACACCGTAC
CAGCCCGAGG/AATAC TGTCCCAGGGCCGCCTGGAGAGCTTACTCAACTATCAGACCATGGTGTGTGACATCACAGGGATGGCAGTGGCCAATGCGTCGTTACTAGATGAAGGAACCGCCGCTGCAGAGGCCATGCAGCTCTGCAACAGGTTACTGCAGGAACATTTATATTGCTTTATGTGTTTATTCTGTTAGCCAACACCTGAACCAGACCATCCAGGTCTTTAGTGTTCAGGATGTTCCCTCCTCGAGGCTAGGAGGGATAATTGACACTTGTCTGTTTCTTTTTAAAGGCAAAACAAAAGAAGAATGTTCTACATCGACCCACGCTGCCATCCTCAAACGATTGCAGTTGTGCAAACTAGAGCCAAGTACGGAAATGATGCAGTCTCTCTCTCTATCTTTCTCTTTATCTCTATTTCTAGAATAGTTTGGCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None