Genomic Feature
ihb815
Notes
| Comment | Citation |
|---|---|
| Homozygotes die between 7 and 15 dpf. | Chen et al., 2018 |
| The bloc1s1 ihb815 allele harbors a 17-bp deletion that includes the splicing ... | Chen et al., 2018 |
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 22: 10127306 - 10127322 (GRCz11) (1) Details
- Nucleotide change
- CCAACTCACCCTACATT/-
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 17 bp deleted in Donor Splice Site of Exon 2 (1)
- Transcript Consequence
- Frameshift (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
CTTTTTTTCATACATTCAGGCCTGTGTTACTTTACAACACATAAGCAAGCTGTTTTCCATGAATATGGTAGATTTTTTATTCATTAGCCACTTTACCTGCACTAAACAGTAAAAGTATTTGCTCCACAATGTTTATGAGCCCTAATAAACTAAAAAGCAACGATAACAACAGTGTACAAATCAAGCAGCATCTTAGACTTTTATTTACAGGTACAAAAAACACCAAGAAGTCTCATATGATCATGTTTAAAATGACATTAAAAATTATTTTTGCACGCGACATTTCTTATGTGACCATACTTATAATAATGCACAAGATTTTGATACATTTGTTGTGAAAAGCCATTCACTTACATTCAGTCATGCAGTTTTAAGCTGCTTTCACAGAGTTTCGTCATAATGTACACACTTAAAGACGTGGATTATGACCACATTCATCACATGAACTCACCATAGAAATCCTGTGCATTAAGTAACACCTTAGAAAATATAAAACCTTT
CCAACTCACCCTACATT/- GAGATGATCCACCAGAGCTTCAGTTAAACATGTAGCAGCTGCTATTGCTTCTCTTCTTCGTCTTTCTGTAGATTACAGTAGCATTTTATAACATTAGGATTTATTTCAGGACATTATTATTTAGTGTAAAGTTTAACATCTTTAAACATAAATAAAGCGATTTCTAAATTCACGTTTTTGTAAAAATAATGATAATAATAATAATAAAAATAAATAAGTTGTTTGTTTTTGTATTGAAATAAACACTAAATCAAAAAAAATCAAGGTTTCTGAATATTTAATTTTAATGAACTTCTATATTTTGTTACGTATTTATTCATAATTTTTTGCATGTTTTGCCTTAATATTCTCCATTCATGCGATATATAAGTAGTCAGGAAATAAAAAAACAACGTCAAAGCAAAAGATTAGTGAACTCCAAAAATGACCTCTCAAAAACCTAAATCTCATTGGAATATCGAATGCAGGTTTTTATAAACGTTAACTTAAAAACTTGAACA - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None