Genomic Feature

ct843

ID
ZDB-ALT-170522-12
Name
ct843
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Prober Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Delins
Variant Location
Chr 1: 51684270 - 51684281 (GRCz11) (1) Details
Nucleotide change
GTGGACACGTAG/ACCAA
Variant Notes
predicted mutant protein lacks more than 4 transmembrane domains and is thus  ...
Mutant contains a 7 bp deletion (nucleotides 411-422 of the open reading frame:  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
Net 7 bp deleted from position 411 to 422 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TTTGAAGTCCTAGTTTGTGCTCAGTTTATAGAAAGCAAAATTCTCACCTTTATTACTCCTAATGCAACAAAATGAAGATTATATAATGCTTGCCAAAATGAATGCAGCCACAAAAAATACTGCTAGTTACTGTAGTAGTAGTAATAATAATAATAATATTTGATTACAAGATGATTAATATATTAATAATATATATCAGCCACCAGCACTCTGACAGCTTAAATAAACCTTAATGTATCATTAGAAGCCATGGGTCTACATTTTGCTTTGCCTGTATATTATTTATATAATATATTTTTGTACCCTTAAAGAATAAAAAGTCATTTTAGATAGCCGGAATGTGAGTAAACTGACAGCAAATATTCATTTTTCGCTTGAACACACTACTCTAAGAACTAAGTCTTGCCAAAAATCCCATTGGTGCATGTATTATTTATTTTACTATTGAATTATTTAAGACAAGCACTCACCTGTCCACAGCGATGGCCAGCAGAGCATTG
GTGGACACGTAG/ACCAA AGAGACACAGTCCTCAAGTAGTTAATGGAGACACAAAGCACAATCCCATGATCCCATGACAGCCGCTTGACCACGTAATAATCCACCAGGAAGGGGCAGCACACAGTCGCCACCAGAAAGTCTGATATTGCCAAGTTGGCGATGAGTAAATTGGTCAAATTCCTCAATTTCTTGTAACGTGCCAGCGAGGCGATAAATACGCAATTACCAACGCCACAGACCAGCATAATGCAAACCAGGACCATCGCAATTACAATGGTGGCCACGAAAAACGCTCGTCCCTGAGTCGTGTCGGGAATTTCGTCCACCGGGACCTCGTAATCCACAGGGATGTCATAGATGAGGTCATGAGGACTCCCGGACGGGTGAATAAGAGTCCATGTCTCTGTGCTTGTGTTGTTTTCAGTCATCTTGTGTGTTTACTGGTCCGTCAAAGCACCGGGGTCTTCCATACTTGAATATATAATCTGCAAAACACACAAGATTTTCACTGTACGATG
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations