PUBLICATION
Gyrase ATPase domain as an antitubercular drug discovery platform: structure-based design and lead optimization of nitrothiazolyl carboxamide analogues
- Authors
- Jeankumar, V.U., Renuka, J., Kotagiri, S., Saxena, S., Kakan, S.S., Sridevi, J.P., Yellanki, S., Kulkarni, P., Yogeeswari, P., Sriram, D.
- ID
- ZDB-PUB-170214-319
- Date
- 2014
- Source
- ChemMedChem 9: 1850-9 (Journal)
- Registered Authors
- Kulkarni, Pushkar
- Keywords
- DNA gyrase, enzymes, inhibitors, tuberculosis, virtual screening
- MeSH Terms
-
- Amides/chemical synthesis
- Amides/chemistry*
- Amides/pharmacology
- Animals
- Antitubercular Agents/chemical synthesis
- Antitubercular Agents/chemistry*
- Antitubercular Agents/pharmacology
- Bacterial Proteins/antagonists & inhibitors
- Bacterial Proteins/metabolism
- DNA Gyrase/chemistry*
- DNA Gyrase/metabolism
- Drug Design*
- Heart Rate/drug effects
- Microbial Sensitivity Tests
- Mycobacterium tuberculosis/drug effects
- Mycobacterium tuberculosis/enzymology
- Structure-Activity Relationship
- Thiazoles/chemistry*
- Zebrafish
- PubMed
- 24962352 Full text @ ChemMedChem.
Citation
Jeankumar, V.U., Renuka, J., Kotagiri, S., Saxena, S., Kakan, S.S., Sridevi, J.P., Yellanki, S., Kulkarni, P., Yogeeswari, P., Sriram, D. (2014) Gyrase ATPase domain as an antitubercular drug discovery platform: structure-based design and lead optimization of nitrothiazolyl carboxamide analogues. ChemMedChem. 9:1850-9.
Abstract
In this study, we explored the pharmaceutically underexploited mycobacterial gyrase ATPase (GyrB) domain as a template for a structure-based virtual screening of our in-house (BITS Pilani) compound collection to discover new inhibitors targeting Mycobacterium tuberculosis (M.tb.) The hit identified was further customized by using a combination of molecular docking and medicinal chemistry strategies to obtain an optimized analogue displaying considerable in vitro enzyme efficacy and bactericidal properties against the M.tb. H37 Rv strain. The binding affinity of the ligand toward the GyrB domain was reascertained by differential scanning fluorimetry experiments. Further evaluation of the hERG toxicity (a major limitation among the previously reported N-linked aminopiperidine analogues) indicated these molecules to be completely devoid of cardiotoxicity, a significant achievement within this class.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping