PUBLICATION
The Zebrafish Information Network (ZFIN): the zebrafish model organism database
- Authors
- Sprague, J., Clements, D., Conlin, T., Edwards, P., Frazer, K., Schaper, K., Segerdell, E., Song, P., Sprunger, B., and Westerfield, M.
- ID
- ZDB-PUB-030115-12
- Date
- 2003
- Source
- Nucleic acids research 31(1): 241-243 (Review)
- Registered Authors
- Clements, David, Conlin, Tom, Frazer, J., Schaper, Kevin, Segerdell, Erik, Song, Peiran, Sprague, Judy, Sprunger, Brock, Westerfield, Monte
- Keywords
- none
- MeSH Terms
-
- Animals
- Databases, Genetic*
- Gene Expression
- Genome
- Models, Animal
- Phylogeny
- Terminology as Topic
- Zebrafish/anatomy & histology
- Zebrafish/genetics*
- Zebrafish/growth & development
- Zebrafish Proteins/genetics
- Zebrafish Proteins/metabolism
- PubMed
- 12519991 Full text @ Nucleic Acids Res.
Citation
Sprague, J., Clements, D., Conlin, T., Edwards, P., Frazer, K., Schaper, K., Segerdell, E., Song, P., Sprunger, B., and Westerfield, M. (2003) The Zebrafish Information Network (ZFIN): the zebrafish model organism database. Nucleic acids research. 31(1):241-243.
Abstract
The Zebrafish Information Network (ZFIN) is a web based community resource that serves as a centralized location for the curation and integration of zebrafish genetic, genomic and developmental data. ZFIN is publicly accessible at http://zfin.org. ZFIN provides an integrated representation of mutants, genes, genetic markers, mapping panels, publications and community contact data. Recent enhancements to ZFIN include: (i) an anatomical dictionary that provides a controlled vocabulary of anatomical terms, grouped by developmental stages, that may be used to annotate and query gene expression data; (ii) gene expression data; (iii) expanded support for genome sequence; (iv) gene annotation using the standardized vocabulary of Gene Ontology (GO) terms that can be used to elucidate relationships between gene products in zebrafish and other organisms; and (v) collaborations with other databases (NCBI, Sanger Institute and SWISS-PROT) to provide standardization and interconnections based on shared curation.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping