PUBLICATION

The Zebrafish Information Network (ZFIN): the zebrafish model organism database

Authors
Sprague, J., Clements, D., Conlin, T., Edwards, P., Frazer, K., Schaper, K., Segerdell, E., Song, P., Sprunger, B., and Westerfield, M.
ID
ZDB-PUB-030115-12
Date
2003
Source
Nucleic acids research   31(1): 241-243 (Review)
Registered Authors
Clements, David, Conlin, Tom, Frazer, K., Schaper, Kevin, Segerdell, Erik, Song, Peiran, Sprague, Judy, Sprunger, Brock, Westerfield, Monte
Keywords
none
MeSH Terms
  • Animals
  • Databases, Genetic*
  • Gene Expression
  • Genome
  • Models, Animal
  • Phylogeny
  • Terminology as Topic
  • Zebrafish/anatomy & histology
  • Zebrafish/genetics*
  • Zebrafish/growth & development
  • Zebrafish Proteins/genetics
  • Zebrafish Proteins/metabolism
PubMed
12519991 Full text @ Nucleic Acids Res.
Abstract
The Zebrafish Information Network (ZFIN) is a web based community resource that serves as a centralized location for the curation and integration of zebrafish genetic, genomic and developmental data. ZFIN is publicly accessible at http://zfin.org. ZFIN provides an integrated representation of mutants, genes, genetic markers, mapping panels, publications and community contact data. Recent enhancements to ZFIN include: (i) an anatomical dictionary that provides a controlled vocabulary of anatomical terms, grouped by developmental stages, that may be used to annotate and query gene expression data; (ii) gene expression data; (iii) expanded support for genome sequence; (iv) gene annotation using the standardized vocabulary of Gene Ontology (GO) terms that can be used to elucidate relationships between gene products in zebrafish and other organisms; and (v) collaborations with other databases (NCBI, Sanger Institute and SWISS-PROT) to provide standardization and interconnections based on shared curation.
Genes / Markers
Figures
Expression
Phenotype
Mutation and Transgenics
Human Disease / Model Data
Sequence Targeting Reagents
Fish
Antibodies
Orthology
Engineered Foreign Genes
Mapping
Errata and Notes