ZFIN is now using GRCz12tu for Genomic Data
Gene
rxrba
- ID
- ZDB-GENE-980526-436
- Name
- retinoid x receptor, beta a
- Symbol
- rxrba Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Contributes to DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in regulation of DNA-templated transcription. Acts upstream of or within negative regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including blastoderm; digestive system; eye; gonad; and tail bud. Orthologous to human RXRB (retinoid X receptor beta).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 18 figures from 8 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:66116 (1 image)
- u29942 (7 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000536 | Nuclear hormone receptor, ligand-binding domain |
| Domain | IPR001628 | Zinc finger, nuclear hormone receptor-type |
| Domain | IPR021780 | Nuclear/hormone receptor activator site AF-1 |
| Family | IPR000003 | Retinoid X receptor/HNF4 |
| Family | IPR001723 | Nuclear hormone receptor |
| Family | IPR050274 | Nuclear hormone receptor family NR2 subfamily |
| Homologous_superfamily | IPR013088 | Zinc finger, NHR/GATA-type |
| Homologous_superfamily | IPR035500 | Nuclear hormone receptor-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Nuclear hormone receptor | Nuclear/hormone receptor activator site AF-1 | Nuclear hormone receptor family NR2 subfamily | Nuclear hormone receptor, ligand-binding domain | Nuclear hormone receptor-like domain superfamily | Retinoid X receptor/HNF4 | Zinc finger, NHR/GATA-type | Zinc finger, nuclear hormone receptor-type |
|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M2B632 | InterPro | 463 | ||||||||
| UniProtKB:A0A8M3ASC4 | InterPro | 472 | ||||||||
| UniProtKB:A0A8M2B5Y2 | InterPro | 449 | ||||||||
| UniProtKB:A0A8M3AK00 | InterPro | 466 | ||||||||
| UniProtKB:A0A8M3B3B9 | InterPro | 458 | ||||||||
| UniProtKB:A0A8M9PAS6 | InterPro | 447 | ||||||||
| UniProtKB:Q7SYN5 | InterPro | 471 | ||||||||
| UniProtKB:A0A8M3AVB4 | InterPro | 480 | ||||||||
| UniProtKB:Q1LV96 | InterPro | 438 | ||||||||
| UniProtKB:A0AB13A9F7 | InterPro | 472 | ||||||||
| UniProtKB:A0AB32T6R7 | InterPro | 416 | ||||||||
| UniProtKB:A0AB32TB08 | InterPro | 430 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
rxrba-201
(1)
|
Ensembl | 2,294 nt | ||
| mRNA |
rxrba-202
(1)
|
Ensembl | 552 nt | ||
| mRNA |
rxrba-204
(1)
|
Ensembl | 940 nt | ||
| mRNA |
rxrba-205
(1)
|
Ensembl | 2,548 nt | ||
| mRNA |
rxrba-206
(1)
|
Ensembl | 780 nt | ||
| mRNA |
rxrba-207
(1)
|
Ensembl | 2,495 nt | ||
| ncRNA |
rxrba-002
(1)
|
Ensembl | 568 nt |
Interactions and Pathways
Plasmids
No data available
- Genome Browsers