ZFIN is now using GRCz12tu for Genomic Data
Gene
ly97.3
- ID
- ZDB-GENE-170621-3
- Name
- lymphocyte antigen 97, tandem duplicate 3
- Symbol
- ly97.3 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 2 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Enables lipopolysaccharide binding activity. Acts upstream of or within defense response to Gram-negative bacterium and response to lipopolysaccharide. Predicted to be located in plasma membrane and side of membrane. Is expressed in several structures, including blastoderm; blastomere; digestive system; endoderm; and floor plate neural tube.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 7 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Ly-6 antigen/uPA receptor-like | Snake toxin-like superfamily |
|---|---|---|---|---|
| UniProtKB:A0A2R8RTX1 | InterPro | 94 |
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- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
ly97.3-201
(1)
|
Ensembl | 285 nt |
1 - 1 of 1
Interactions and Pathways
No data available
Plasmids
No data available
No data available
No data available
- Genome Browsers
| Type | Accession # | Genome Assembly | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_009298912 (1) | GRCz12tu | 749 nt | |
| Genomic | GenBank:BX908782 (1) | 178028 nt | ||
| Polypeptide | UniProtKB:A0A2R8RTX1 (1) | 94 aa |
No data available
- Kawahara, A., Morita, H., Yanagi, K., Ishizaka, T., Taimatsu, K., Ohga, R. (2018) Developmental expression of the slurp-like1/ly2.3/ly97.3 and slurp-like2/ly2.2/ly97.2 genes during zebrafish early embryogenesis. Gene expression patterns : GEP. 30:32-36
- Liu, X., Cao, X., Wang, S., Ji, G., Zhang, S., Li, H. (2017) Identification of Ly2 members as antimicrobial peptides from zebrafish Danio rerio. Bioscience Reports. 37(1)
- Wang, M., Li, L., Guo, Q., Zhang, S., Ji, D., Li, H. (2016) Identification and expression of a new Ly6 gene cluster in zebrafish Danio rerio, with implications of being involved in embryonic immunity. Fish & shellfish immunology. 54:230-40
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