Gene
col15a1b
- ID
- ZDB-GENE-070912-689
- Name
- collagen, type XV, alpha 1b
- Symbol
- col15a1b Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 2 Mapping Details/Browsers
- Description
- Predicted to be an extracellular matrix structural constituent conferring tensile strength. Acts upstream of or within eye development and regulation of motor neuron axon guidance. Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including aortic arch; digestive system; nervous system; neural plate; and neural tube. Orthologous to human COL15A1 (collagen type XV alpha 1 chain).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 33 figures from 15 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb491 (27 images)
- IMAGE:7158238 (13 images)
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR010515 | Collagenase NC10/endostatin |
| Domain | IPR045463 | Collagen type XV/XVIII, trimerization domain |
| Domain | IPR048287 | Thrombospondin-like, N-terminal domain |
| Family | IPR050149 | Collagen superfamily |
| Homologous_superfamily | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily |
| Homologous_superfamily | IPR016186 | C-type lectin-like/link domain superfamily |
| Homologous_superfamily | IPR016187 | C-type lectin fold |
| Repeat | IPR008160 | Collagen triple helix repeat |
Domain Details Per Protein
| Protein | Additional Resources | Length | Collagenase NC10/endostatin | Collagen superfamily | Collagen triple helix repeat | Collagen type XV/XVIII, trimerization domain | Concanavalin A-like lectin/glucanase domain superfamily | C-type lectin fold | C-type lectin-like/link domain superfamily | Thrombospondin-like, N-terminal domain |
|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:D3GN36 | InterPro | 1169 | ||||||||
| UniProtKB:A0A8M2BIM9 | InterPro | 1259 | ||||||||
| UniProtKB:A0A8M3APP4 | InterPro | 1315 | ||||||||
| UniProtKB:A0A8M2BII4 | InterPro | 1301 | ||||||||
| UniProtKB:A0A8M3B7P8 | InterPro | 1303 | ||||||||
| UniProtKB:A0A8M6Z1E7 | InterPro | 1245 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
col15a1b-201
(1)
|
Ensembl | 3,738 nt | ||
| mRNA |
col15a1b-202
(1)
|
Ensembl | 4,560 nt | ||
| mRNA |
col15a1b-203
(1)
|
Ensembl | 3,513 nt |
Interactions and Pathways
No data available
| Name | Type | Antigen Genes | Isotype | Host Organism | Assay | Source | Citations |
|---|---|---|---|---|---|---|---|
| Ab1-col15a1b | polyclonal | Rabbit |
|
1 |
Plasmids
No data available