Gene

pcdh1a6

ID

ZDB-GENE-050203-2

Name

protocadherin 1 alpha 6

Symbol

pcdh1a6 Nomenclature History

Previous Names

DrPcdh1ab4 (1)

Type

protein_coding_gene

Location

Chr: 10 Mapping Details/Browsers

Description

Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With pcdh1a6 Human Ortholog

No data available

Associated With pcdh1a6 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR020894	Cadherin conserved site
Domain	IPR002126	Cadherin-like
Domain	IPR013164	Cadherin, N-terminal
Domain	IPR031904	Cadherin, C-terminal catenin-binding domain
Domain	IPR032455	Cadherin, cytoplasmic C-terminal domain
Family	IPR050174	Protocadherin/Cadherin-related Cell Adhesion
Homologous_superfamily	IPR015919	Cadherin-like superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	Cadherin conserved site	Cadherin, C-terminal catenin-binding domain	Cadherin, cytoplasmic C-terminal domain	Cadherin-like	Cadherin-like superfamily	Cadherin, N-terminal	Protocadherin/Cadherin-related Cell Adhesion
UniProtKB:I6LC33	InterPro	939

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	pcdh1a6-201 (1) Ensembl	Ensembl	723 nt	Select Tool ZFIN BLAST
mRNA	pcdh1a6-204 (1) Ensembl	Ensembl	1,928 nt	Select Tool ZFIN BLAST
mRNA	zgc:123181-202 (1) Ensembl	Ensembl	1,813 nt	Select Tool ZFIN BLAST
mRNA	zgc:123181-203 (1) Ensembl	Ensembl	5,299 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-pcdh1a	polyclonal	pcdh1a1 pcdh1a2 pcdh1a3 pcdh1a4 pcdh1a5 pcdh1a6 pcdh1a7 pcdh1a8 pcdh1a9 pcdh1a10		Rabbit	IHC WB		2

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance

Citations