ZFIN is now using GRCz12tu for Genomic Data
Gene
shroom4
- ID
- ZDB-GENE-041111-246
- Name
- shroom family member 4
- Symbol
- shroom4 Nomenclature History
- Previous Names
-
- im:7145757
- wu:fe05h01
- zgc:194172
- zgc:194173
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable actin filament binding activity. Acts upstream of or within peristalsis. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in several cellular components, including adherens junction; apical junction complex; and apical plasma membrane. Is expressed in brain; gut; head; heart; and pectoral fin bud. Orthologous to human SHROOM4 (shroom family member 4).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7145757 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- 2 figures from Kolvenbach et al., 2022
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Apx/Shrm Domain 2 | PDZ domain | PDZ superfamily | Shroom family |
|---|---|---|---|---|---|---|
| UniProtKB:A0A8N7TES2 | InterPro | 1508 | ||||
| UniProtKB:F1Q6C1 | InterPro | 1634 | ||||
| UniProtKB:A0AB32TXJ2 | InterPro | 1608 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
shroom4-201
(1)
|
Ensembl | 6,362 nt | ||
| mRNA |
shroom4-202
(1)
|
Ensembl | 541 nt |
Interactions and Pathways
No data available
| Name | Type | Antigen Genes | Isotype | Host Organism | Assay | Source | Citations |
|---|---|---|---|---|---|---|---|
| Ab1-shroom4 | polyclonal | Rabbit |
|
2 |
Plasmids
No data available
- Genome Browsers