ZFIN is now using GRCz12tu for Genomic Data

Gene

lmo7a

ID

ZDB-GENE-030219-74

Name

LIM domain 7a

Symbol

lmo7a Nomenclature History

Previous Names

lmo7 (1)
fc03h03
id:ibd5155 (1)
si:dkey-57a22.10 (1)
wu:fc03h03 (1)

Type

protein_coding_gene

Location

Chr: 9 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable cysteine-type deubiquitinase activity and metal ion binding activity. Predicted to act upstream of or within regulation of cell adhesion and regulation of signaling. Is expressed in several structures, including brain; digestive system; eye; immature eye; and pericardial region. Orthologous to human LMO7 (LIM domain 7).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lmo7a Human Ortholog

No data available

Associated With lmo7a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001478	PDZ domain
Domain	IPR001715	Calponin homology domain
Domain	IPR001781	Zinc finger, LIM-type
Domain	IPR031865	Domain of unknown function DUF4757
Domain	IPR041489	PDZ domain 6
Family	IPR003096	Smooth muscle protein/calponin
Family	IPR029978	LIM domain only protein 7
Homologous_superfamily	IPR036034	PDZ superfamily
Homologous_superfamily	IPR036872	CH domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M9QJM0	InterPro	1398
UniProtKB:A0A8M9PS20	InterPro	1661
UniProtKB:A0A8M9Q4J8	InterPro	1868
UniProtKB:A0A8M9PS15	InterPro	1874
UniProtKB:A0A8M9Q4K1	InterPro	1648
UniProtKB:A0A8M9QFD0	InterPro	1700
UniProtKB:A0A8M9QAP1	InterPro	1840
UniProtKB:B0UYM8	InterPro	1826
UniProtKB:A0A8M9QAP5	InterPro	1408
UniProtKB:A0A8M9QJL5	InterPro	1821
UniProtKB:A0A8M3B5K4	InterPro	1384
UniProtKB:A0A8M9QFC6	InterPro	1876
UniProtKB:A0A8M3B2L7	InterPro	1862
UniProtKB:A0A8M9QJL3	InterPro	1893
UniProtKB:A0A8M3AVY5	InterPro	1879
UniProtKB:A0AB32TX01	InterPro	1886
UniProtKB:A0AB32TXX3	InterPro	1880
UniProtKB:A0AB32TZW8	InterPro	1852
UniProtKB:A0AB32U0A2	InterPro	1420
UniProtKB:A0AB32U197	InterPro	1833
UniProtKB:A0AB32U1B3	InterPro	1905
UniProtKB:A0AB32U2G4	InterPro	1660

Transcripts

Genome Browsers

NCBI Map Viewer

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	lmo7a-203 (1) Ensembl	Ensembl	625 nt	Select Tool ZFIN BLAST
mRNA	lmo7a-201 (1) Ensembl	Ensembl	6,323 nt	Select Tool ZFIN BLAST
mRNA	lmo7a-202 (1) Ensembl	Ensembl	812 nt	Select Tool ZFIN BLAST
mRNA	lmo7a-204 (1) Ensembl	Ensembl	1,052 nt	Select Tool ZFIN BLAST
mRNA	lmo7a-210 (1) Ensembl	Ensembl	663 nt	Select Tool ZFIN BLAST
mRNA	lmo7a-212 (1) Ensembl	Ensembl	754 nt	Select Tool ZFIN BLAST
ncRNA	lmo7a-008 (1) Ensembl	Ensembl	853 nt	(2 sequences)
ncRNA	lmo7a-206 (1) Ensembl	Ensembl	824 nt	Select Tool ZFIN BLAST
ncRNA	lmo7a-207 (1) Ensembl	Ensembl	733 nt	Select Tool ZFIN BLAST
ncRNA	lmo7a-208 (1) Ensembl	Ensembl	895 nt	Select Tool ZFIN BLAST
ncRNA	lmo7a-209 (1) Ensembl	Ensembl	853 nt	Select Tool ZFIN BLAST
ncRNA	lmo7a-211 (1) Ensembl	Ensembl	914 nt	Select Tool ZFIN BLAST
ncRNA	lmo7a-213 (1) Ensembl	Ensembl	962 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations