Gene

col7a1l

ID

ZDB-GENE-030131-9861

Name

collagen type VII alpha 1-like

Symbol

col7a1l Nomenclature History

Previous Names

col7a1b (1)
cb483 (1)
sb:cb483 (1)
si:dkey-117n7.1
si:dkey-117n7.2

Type

protein_coding_gene

Location

Chr: 4 Mapping Details/Browsers

Description

Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Is expressed in several structures, including central nervous system; ectoderm; endoderm; integument; and pharynx. Human ortholog(s) of this gene implicated in epidermolysis bullosa dystrophica (multiple) and nonsyndromic congenital nail disorder 8. Orthologous to human COL7A1 (collagen type VII alpha 1 chain).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

10 figures from 5 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

cb483 (13 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With col7a1l Human Ortholog

No data available

Associated With col7a1l Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR002035	von Willebrand factor, type A
Domain	IPR003961	Fibronectin type III
Family	IPR050149	Collagen superfamily
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR036116	Fibronectin type III superfamily
Homologous_superfamily	IPR036465	von Willebrand factor A-like domain superfamily
Repeat	IPR008160	Collagen triple helix repeat

Domain Details Per Protein

Protein	Additional Resources	Length	Collagen superfamily	Collagen triple helix repeat	Fibronectin type III	Fibronectin type III superfamily	Immunoglobulin-like fold	von Willebrand factor A-like domain superfamily	von Willebrand factor, type A
UniProtKB:A0AB32TT82	InterPro	2724
UniProtKB:A0AB32TTW0	InterPro	2707

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	col7a1l-202 (1) Ensembl	Ensembl		5,167 nt	Select Tool ZFIN BLAST
mRNA	si:dkey-117n7.2-201 (1) Ensembl	Ensembl		503 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations