Gene

ncam1b

ID

ZDB-GENE-010822-2

Name

neural cell adhesion molecule 1b

Symbol

ncam1b Nomenclature History

Previous Names

ncam3
zPCAM (1)

Type

protein_coding_gene

Location

Chr: 15 Mapping Details/Browsers

Description

Involved in axon guidance. Predicted to localize to neuron projection. Human ortholog(s) of this gene implicated in bipolar disorder and pancreatic cancer. Is expressed in nervous system; otic vesicle; posterior neural keel; spinal cord neural rod; and spinal cord neural tube. Orthologous to human NCAM1 (neural cell adhesion molecule 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

18 figures from 7 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

cssl:d097 (19 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 2 figures from Langhauser et al., 2012
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ncam1b Human Ortholog

No data available

Associated With ncam1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003598	Immunoglobulin subtype 2
Domain	IPR003599	Immunoglobulin subtype
Domain	IPR003961	Fibronectin type III
Domain	IPR007110	Immunoglobulin-like domain
Domain	IPR013098	Immunoglobulin I-set
Family	IPR009138	Neural cell adhesion
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR036116	Fibronectin type III superfamily
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily

Domain Details Per Protein

Protein	Length	Fibronectin type III	Fibronectin type III superfamily	Immunoglobulin I-set	Immunoglobulin-like domain	Immunoglobulin-like domain superfamily	Immunoglobulin-like fold	Immunoglobulin subtype	Immunoglobulin subtype 2	Neural cell adhesion
UniProtKB:A0A8M3ASL0 InterPro	866
UniProtKB:A0A8M2B3P6 InterPro	1055
UniProtKB:A0A8M2B488 InterPro	1047
UniProtKB:A0A8M2B466 InterPro	1039
UniProtKB:A0A8M3AH81 InterPro	1044
UniProtKB:A0A8M6Z9Y9 InterPro	1042
UniProtKB:A0A8M2B3H7 InterPro	1038
UniProtKB:A0A8M3APN8 InterPro	1045
UniProtKB:A0A8M3ASK5 InterPro	1049
UniProtKB:A0A8M2B493 InterPro	1020
UniProtKB:A0A8M2B3I6 InterPro	1037
UniProtKB:A0A8M3B0V3 InterPro	1054
UniProtKB:A0A8M2B3Q1 InterPro	1030
UniProtKB:A0A8M3B0W0 InterPro	1043
UniProtKB:Q90YM2 InterPro	1031
UniProtKB:A0A8M3AID4 InterPro	1050
UniProtKB:A0A8M3APP3 InterPro	753
UniProtKB:A0A8M3AH87 InterPro	1021
UniProtKB:A0A8M3AID9 InterPro	917

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ncam1b-202 (1) Ensembl	Havana	961 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	ncam1b-203 (1) Ensembl	Havana	3738 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	ncam1b-204 (1) Ensembl	Havana	812 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-ncam1b	polyclonal	ncam1b		Rabbit	IHC		2

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations