Gene

efnb2b

ID

ZDB-GENE-010618-1

Name

ephrin-B2b

Symbol

efnb2b Nomenclature History

Previous Names

fc10d03
hm:zeh0344 (1)
wu:fc10d03
zeh0344 (1)

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to have ephrin receptor binding activity. Involved in Kupffer's vesicle development and blood vessel development. Predicted to localize to plasma membrane. Is expressed in margin. Orthologous to human EFNB2 (ephrin B2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from 4 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Zhang et al., 2016
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With efnb2b Human Ortholog

No data available

Associated With efnb2b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001799	Ephrin receptor-binding domain
Family	IPR031328	Ephrin
Homologous_superfamily	IPR008972	Cupredoxin

Domain Details Per Protein

Protein	Length	Cupredoxin	Ephrin	Ephrin receptor-binding domain
UniProtKB:Q90Z32 InterPro	334

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	efnb2b-201 (1) Ensembl	Havana	1364 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	efnb2b-002 (1) Ensembl	Havana	815 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	efnb2b-003 (1) Ensembl	Havana	718 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

SignaFish

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations