Genomic Feature
ya3322
- ID
- ZDB-ALT-211007-1
- Name
- ya3322
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Giraldez Lab
- Current Source
- Other Pages
-
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 17: 27414935 - 27415157 (GRCz11) (1) Details
- Nucleotide change
- GGGAAAGAAGTTGAAGCCATGCTGTCCTAGGAAAGGGTTGTTCCCCAGTGCTCCAGACTGTCCAAACATGGCATCCGGGAGAAAGTGGTGCTCCCCATTGCTAAGCTGTCCATAAGAGGCCAGGTAAGGCATCGGGGGATCTCCACCTGTTGACCATGCCGCTTCATTCAGGGAATAGGTGAAGCCTATTGAGGGGCTGTAGTAACTGGGCATGTAGGAGTCG/-
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 223 bp deleted in Exon 4 (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
GGCAGGGAAGTCTGCTGTGGGGCTGCTGGTTTAGGCATATTCCCCTTGTTGTCCCATGTCCCAATATCCATGTTATGTTTTATTGGAGGTGGTGGCAGATTTGTCCCACCAAGTCCCCCCTTAGTTTTCAATTTAGGCTGTGGTTTGGCTGGCTTGCTGGCAATGTCCGCCCAAGAAGCAGTTTTCGCAGGAGCCATGGAGGCAGGAGGCATGGTTGGAGCTGTAGACACCTGACTCAATGGCCCTCCGGGAAGTCCAGAACCAACAACCTTTGGTGCCATGTCCCCTGCCCCAATTTTAAGCCCTGCCATGCCCTGATCCAAGCTATTCATCCCCACTGCCTTGTTGAGTGGCTCATTGGCTGCAAAGGGAGACTGTCCGTCAATCATTGCACCTCCTAGCGTGCTAGGGGCATAGGCGTAACTGCTGCTGTAACCTGAACTCTGTGTGGACTGTCCCTGAGAGCTGCTGTTGCCCCAAGCGGGAAAGTCAATCCCACT
GGGAAAGAAGTTGAAGCCATGCTGTCCTAGGAAAGGGTTGTTCCCCAGTGCTCCAGACTGTCCAAACATGGCATCCGGGAGAAAGTGGTGCTCCCCATTGCTAAGCTGTCCATAAGAGGCCAGGTAAGGCATCGGGGGATCTCCACCTGTTGACCATGCCGCTTCATTCAGGGAATAGGTGAAGCCTATTGAGGGGCTGTAGTAACTGGGCATGTAGGAGTCG/- GACATGGCCGTATAGGCATTGCTCTGTAAAAACAACAACATAAATTGTGATTAGTCATTATCAACTCCAGACAAGTAGGATTAGAAAGGTAATGCAACAACCTGGAAAATATTGCCAGGTGACAATTGCTCCCTGTTGTCACCTGGAAACATTTCTCCCCTTGTAGCATTAACCCTTTGAGTAAAAACTTAAGTACATTAACTGTAGATTAAAGTCAAATCAATTATCAAGATAATCTCTTGCTTTATTATTTTACTTTGTAAAAGTAAACCTGAATAAAAACTAAATAAAAAAAATTTAAATGAAATTTTCCATGTCCATTAAGGTAAATATTTTTAATTCTTTGATATGCACCCATTTTGCATAATTTTAAATATAGCAAAAAATATATCTAAAATAAAAATAACAGCAATAATATTCTATCGACAGATAATGAAATGTCTAAACTTTAAATGGTTTTAATATTCATATACATATTATAAATGTAATGTTAAAACTAC - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
ythdf2ya3322/ya3322 | Homozygous | ♀-/- ♂-/- | Fig. 3 ![]() | ||
ythdf2ya3322/ya3322; ythdf3ya3323/ya3323; ythdf1ya3321/ya3321 | Complex | Fig. 5 ![]() |
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Supplemental Information
- Genotyping protocol
- None