Genomic Feature

pt536

ID
ZDB-ALT-201015-8
Name
pt536
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Beth Roman Lab
Current Source
Zebrafish International Resource Center (ZIRC)    ( order this )
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 12
Variants
Variant Type
Small Deletion
Variant Location
Chr 12: 2648201 - 2648207 (GRCz11) (1) Details
Nucleotide change
AGGCTTT/-
Variant Notes
c.159_165del
p.Gly54* (premature termination codon within the prodomain at  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
7 bp deleted in Exon 1 (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
CATAAACACAAACAAATTCAAAGTGATGGAGTTGCCTTTATAAAAACAGAGCCTGACCGTGTAAATAAGCCTGTCAAAATCTCACTCATTAGTCGTTCTGGTAGTGTTTACAGAACGCTCATTAACTACGCGCTTCCTCCAGATAACCAAGTCCAAACCACAACATTGGTGTCAAAGATAATAGCTATGCTACTATTTTGGTTTCCAGAGCTTAGCGTGGGGCATGGGAGTAAACCTGAGGTTCACTTAAGGAACCCCGATTTCAAAGCATCATCCACAAACCAAAGTCAGATGTAAAACTTGTTGCTCAAAGTCACTTATCGCTGCAGGAACTAAAAGAAGATGTGGCGCGTAGGACATTTGCTCCTTCTGATGTCCATTGTTTTTAGGATTACCGAAGAGAAATCTTTAGGTGACGCTGGCAGCTTGGAAGATTCAATGTTCATTCAAGAGCAGAAGCTGGTTGAAGACGATGACTTGAACAAGGTGGAGAGTTTCTT
AGGCTTT/- ATGAAGGAAGATTTTTTGAGGAAGCTGAACTTATCAGGCGTGCCGCAGGAACACAGAAAGGTTCAGCCTCCTCAGTTCATGATCGAACTCTATAATAGATACGCTTCTGACAAGAACTCCATCCCTCGGTCGGATGTCATCCGAAGCTTTGTCGTTCAGGGTGAGTACACATAAAGAGAGCTCACAATCTCTGAGGCGGATCTGTTCAATATTACACACATTAAAAGAGCTTCTTTGATTGATTGTACCATCAGAGGAAACTTTTCATTAGGTGATATATACTGGAACCAGCAGCGGTGGACAATAACAAGAGTTTTAACTGGATTGCTCACACAAAAATGTTCATTTTACTATCATTTGCTTATTCTTTACGTCAGGGGTCACCAATCTCATTTCTGGAGGTCCGTTGGCCTGCAGGGTTTAGCTCCAACTTGCCTCAACACACCTGCCTGGGTGTTTTAAGTATACCTAGTAAAGCTGCGGTCACACTAGAGTTTGAT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
gdf2pt536/pt536HomozygousUnknowntext only from Capasso et al., 2019
gdf2pt536/+ (AB)HeterozygousUnknown
bmp10lsa11654/sa11654; gdf2pt536/pt536Complextext only from Capasso et al., 2019
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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