Genomic Feature
mi5001
- ID
- ZDB-ALT-190131-2
- Name
- mi5001
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Hitchcock Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 7: 39174103 - 39174121 (GRCz11) (1) Details
- Nucleotide change
- TAACGGCGACTGTGGCCAA/-
- Variant Notes
-
19 bp deletion in exon 3, generating premature stop codon and protein truncation
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 19 bp deleted in Exon 3 (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
TCATCCATTCATCTGTAATTGGGAAGTTGAAATATTAAAAGGGCAAAGTGTGGTCTCAGCGCAGATGGCTCCATTTCTGTCTTGCCCTTTCATAACAGTACTTATGAAGGAAATTATATCATTATCGCAAACTGCAATTTTCCTTCGCGACAACTGACTATTTCGTGTGTGTTTTTCAGAATGCGGGGCCTGTTTTCCACCCTCCTCGTGGTGCTGGTGGCCTTAATGATCGTGACATCAGAGGCTGGGAAAAACAAGAAAGGTATCAATCATGAATTATACCATCTCCATACTCTCTTCTTTCTTCTCATAGTTCATCTCTAACACATCATGTGACTTTGAAGCTTATTGACGCTGAAAATTCAGTGCTGTTATGTATGATTCTGCGATTAAATGGGAAGTGAATCCAATCATTGTGCTTTCTGTGCCATAGAGAAGAATAAGGGAGGTAAGGGTGGTGCCGACTGTGCGGAGTGGCTCTATGGCAGCTGCGTGGCCAA
TAACGGCGACTGTGGCCAA/- GGCATGAGGGAGGGAACCTGCAATGAACAGACCAGGAAAGTCAAATGCAGAGTGCCATGCAACTGGAAGAAAGAATTTGGAGGTGAGTTAAACTGTGGGTGATTAAAAATAGATATGGTAATCAGGTGGAATTTGCCTCGAGTTATATTTACAGTAAGTCATAGCCATTTTTTTTTTTTTTGAAATTTCTATATTTGGTAGTTTTGTGCCTCTGTGCATTTCTGTTTGTTCTTTGCAGTTGATAATGTCTGACATACTTTACTGTAACTCATTTCCTGCAGCTGACTGCAAGTATAAGTTTGGTAACTGGGGTGAATGTGACGCAGCCACGAGCACAAAGAGCCGCACTGGCACTCTGCAGAAGGCTCTCTTCAACGTCGAATGTCAGCAAACCGTCTCTGTGACCAAACCCTGCACCACCAAGGTCAAAAACAAACCCAAAGGTACATCCTCAACACTCAAACTCACTGAGTAGTATATAGTAATATATAATATATACA - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
mdkami5001/mi5001 (AB) | Homozygous | ♀+/- ♂+/- | 5 figures ![]() | 3 figures ![]() | |
mdkami5001/mi5001; mi2002Tg | Complex | 2 figures ![]() | Figure 5. ![]() |
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Supplemental Information
- Genotyping protocol
- None
- Kapuria, S., Bai, H., Fierros, J., Huang, Y., Ma, F., Yoshida, T., Aguayo, A., Kok, F., Wiens, K.M., Yip, J.K., McCain, M.L., Pellegrini, M., Nagashima, M., Hitchcock, P.F., Mochizuki, N., Lawson, N.D., Harrison, M.M.R., Lien, C.L. (2022) Heterogeneous pdgfrβ+ cells regulate coronary vessel development and revascularization during heart regeneration. Development (Cambridge, England). 149(4):
- Ang, N.B., Saera-Vila, A., Walsh, C., Hitchcock, P.F., Kahana, A., Thummel, R., Nagashima, M. (2020) Midkine-a functions as a universal regulator of proliferation during epimorphic regeneration in adult zebrafish. PLoS One. 15:e0232308
- Nagashima, M., D'Cruz, T.S., Danku, A.E., Hesse, D., Sifuentes, C., Raymond, P.A., Hitchcock, P.F. (2019) Midkine-a is required for cell cycle progression of Müller glia glia during neuronal regeneration in the vertebrate retina. The Journal of neuroscience : the official journal of the Society for Neuroscience. 40(6):1232-1247
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