Genomic Feature
bns50
- ID
- ZDB-ALT-170119-2
- Name
- bns50
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Stainier Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 20: 25341595 - 25341601 (GRCz11) (1) Details
- Nucleotide change
- TTGTAAA/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 7 bp deleted in Exon 3 (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- None
- Flanking Sequence
-
TATCTTATTTGAGTGCATGTGGAGATATAGAATGGTATTAACTAGCATGATCAAGCTAGGCTTAAAATGGAGCTCTTTAGCAAATGTACAAACTCTCACAAGAACATTTTGTCTTATTCCTCAGGCTGTGGCTCAAGAGTGCAGTGGACAATGCCACTGCCCTGAAGTGCCGCCCCAGTGTTCACCTGGTGTAAGCCTAGTTCTGGACACCTGTGGGTGCTGCCGGGTGTGTGCCAAGCAGCTGGGCGAGCTGTGCACAGAACGAGATGTTTGCGACCCCCACAAAGGTCTTTACTGTGACTACGGCTCCCCAAGTAACCGTCGTATTGGTGTCTGCACAGGTAAGGATCTTGGCTGTTGAATTACATGTGTCAAATCTTTACTTGATGATCAGAGTCAGAATTGTAAACAATCTTCCATCTCCGTCCCACAGCCAGAGATGGTGCCACTTGTGTGTTTGGTGGAATGGTGTACCGCAGTGGAGAGTCTTTCCAGAGCAG
TTGTAAA/- TACCAGTGCACGTGTCTGGACGGTGCTGTAGGTTGCGTGCCCCTCTGTGGAATGGACATCAGGCTCCCCAGCCCAGACTGCCCAATGCCCCGCAGGGTGAAAGTGCCTGGGAAGTGCTGCGAGGAGTGGGTGTGTGACTCCCCTCGTCAAAACACCTTTGTGGGATCAGCTTTAGCAGGTGAGCATTTCTCAATCTTAAAAGCCAAACTGTGATGGAAAAATTACTCCTAAAGAATGTATTTAGACAAAGTAATGGTCTTGGTATTAGGGGGTTTAGAATGAATATCAGTATAACATCAGATGTAACAATAAGAATAGCAGGATGACATCATGCTGTTGGATGGAATGTGTTGAGTAACATCTTATTGCTTCTTGTAGCTTACAGAGAGGAGGAGACATACGGTCCCGATCCCTCCATGATGAGAGAGAACTGCCTGGTTCAGACTACAGAATGGAGCGCATGCTCAAAAACCTGTGGCTTGGGAATCTCTACTCGTGTG - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
ccn2abns50/bns50 | Homozygous | ♀+/- ♂+/- | Fig. 2 from Mokalled et al., 2016 | ||
ccn2abns50/+ | Heterozygous | Unknown |
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Supplemental Information
- Genotyping protocol
- None
- Arena, K.A., Zhu, Y., Kucenas, S. (2022) Transforming growth factor-beta signaling modulates perineurial glial bridging following peripheral spinal motor nerve injury in zebrafish. Glia. 70(10):1826-1849
- Rayrikar, A.Y., Wagh, G.A., Santra, M., Patra, C. (2022) Ccn2a-FGFR1-SHH signaling is necessary for intervertebral disc homeostasis and regeneration in adult zebrafish. Development (Cambridge, England). 150(1):
- Mokalled, M.H., Patra, C., Dickson, A.L., Endo, T., Stainier, D.Y., Poss, K.D. (2016) Injury-induced ctgfa directs glial bridging and spinal cord regeneration in zebrafish. Science (New York, N.Y.). 354:630-634
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