Genomic Feature

hg21

ID
ZDB-ALT-150805-4
Name
hg21
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with zinc finger nuclease
Lab of Origin
Sood Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 14
Variants
Variant Type
Delins
Variant Location
Chr 14: 12099536 - 12099544 (GRCz11) (1) Details
Nucleotide change
TTTATCTTG/ATCCTCACCTTTTCCTT
Variant Notes
insertion of 8bp in exon 2, cDNA: 288delCAAGATAAAinsAAGGAAAAGGTGAGGAT;  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
17 bp inserted / 9 bp deleted at position 288 in Exon 2 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
None
Sequences
Flanking Sequence
ATCAAAGAGGGGCTAATAATTCAGACTTCAACTGTGTATAAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATTATTTATTGGTTATTTATTGGTTATTTATTGGTTATTTATTTATTTATTGGGTATTTATTGGTTATTTATTGGTTATTTATTGAATTACGTTCATTTTTGTATAGCGGGCCAGATTCTATTGATATTTATAAAAAGCCTCGCGGGCCGCCACAAAACTGATTGCGGGCCGCAGATGGCCCGCGGGCCGTAGTTTGGACACGCCTGGTCTACACAAAGAATATCAGCTGATACATTGATGGAACATTTTACTCCCTAATATGAGTATTGCCCTCAAAATAGTATTTTGGTTTGGCTATAGACATTACCAGCACAGATTTCCTAAATAATTAATTAGGGTTAGATAATAAACATGGTCTCACCTTATCCTT
TTTATCTTG/ATCCTCACCTTTTCCTT TCGGGCATAAGGAAAGCATGGGATGACTGCAGTGACTCTAGTGGCAGATGCTATTTTGCATGCATTAATCATAATCAGAAGTTCCATAAGATTATCATTAATTTCACCACAGCCACTCTGGACAATGTACACATCTTCTCCACGAACACTCTCTCCAATCTCCACACTGCAGAAGACAGAACATGTTAAAGTTACATTAGTAACATGGTAAAAACCTATCTCAGCTGTTTACACAAATTGAAATGCAACATTTAGTTGATAATTCTTAAAATATTATTAAATTGTTCCACGACAAATAAAACGCATGCTCACTAAAGCTAGCTCAGGTCCCTGAAAGGGCCATGACTAGTTCTATTGTTAAGACCAATCTTAACTTCTGCTTCAAACGTATGCGTATGGTCCGGCACAGCCTCCGCCAACGTGCACCTCAAAAAATGTAACTACATATCGCAACGACACGTACTGTAGTGCAAGCTCTGTGATGGGTCAGATTGGTAACG
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
prps1bhg21/hg21Homozygous♀-/-text only from Pei et al., 2016
prps1bhg21/hg21Homozygous♀+/- ♂+/-text only from Pei et al., 2016
prps1bhg21/hg21 (EKW)Homozygous♀+/- ♂+/-
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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