Genomic Feature

zd1012

ID
ZDB-ALT-150528-5
Name
zd1012
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Rodney Stewart Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 3
Variants
Variant Type
Small Deletion
Variant Location
Chr 3: 40576667 - 40576676 (GRCz11) (1) Details
Nucleotide change
GCCACCAGCA/-
Variant Notes
Boer et al (2015): fscn1aΔ10, frame-shift deletion in exon 1 that  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
10 bp deleted in Exon 1 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
None
Sequences
Flanking Sequence
AATCGTTCATCATGACTTTAATGCTTTTAAAAACATTTTATTATGTTGATATGGTCATCTAAAATCTGCATTTTAAATCTATATCTATAATTTAGCTCTCTAACTACAGTAATATTTAAGTATGACTAGTTTCACAAGGCATGACATCCCATATTTCTCTGTTTTCCAACTCATTTTTTGGGATGCGTGAGTGAGGAGAGGCGGGACGGCGCGTGACATCACTCATCTGTATAAAAGCCCCAGCTGTGTCTGTGCGCTCGCGCTGTGAGGCTGCAGAGAAAGAGAGAGAGAGAGAGGCGCGCGCACGCTCGCTCCAGCAAACAAAGAGACCCGTCAACATCATCCACGGTGCACCAGCAGATCCCGCTCCAGCAAGGCCACGAGCTGCAACCATGACTGCAAACGGAACCAGCGACATGCTCAAAATCCAATTCGGATTGATCAACTGCGGGAACAAGTACCTCACGGCCGAGACCTTCGGCTTCAAGATCAATGCATCA
GCCACCAGCA/- TGAAGAAGAAGCAGATTTGGACCCTGGAGCAAGACGGAGATGATTCAAACATGTTCTTCCTGAAGAGCCACCTGGGACGGTACATCGCAGCCGACAAAGACGGCAACGTGACGGGTGACAGCGAGACCCCGGGCGAGGACTGTCGCTTCATAATCACCGCACATGATGATGGGCGCTGGTCACTGCAGTCCGAGCCGCACAAGCGCTACCTGGGCGGCACCGAGGACAGGATAACCTGCTTCGCCCAGACCATCTCCATCGCGGAGAAATGGAGCGTGCACATCGCCATGCACCCACAGGTCAACATCTTCAGCGTGACTAGAAAAAGGTACGCGCACCTGAGCTCTGAGCAGAACGAGATAGCCATCGACCGGGATGTACCCTGGGGCGTGGATTCCCTCATCACCCTGGTCTTCCAGGACCAGAGGTACCACCTTCAGACCTCCGACAACCGCTTCCTGAAGAACGACGGCAGCCTGTCCCAGACGGCGGATAAGACT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
fscn1azd1012/zd1012Homozygous♀+/- ♂+/-
fscn1azd1012/zd1012Homozygous♀-/- ♂+/-
fscn1azd1012/zd1012; vu234TgComplex3 figures with image from Boer et al., 20153 figures with image from Boer et al., 2015
fscn1azd1012/zd1012; vu234Tg + MO2-cxcr4aComplexFig. 8 with image from Boer et al., 2015Fig. 8 with image from Boer et al., 2015
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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