Genomic Feature
zd1011
- ID
- ZDB-ALT-150528-4
- Name
- zd1011
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Rodney Stewart Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 3: 40576670 - 40576676 (GRCz11) (1) Details
- Nucleotide change
- ACCAGCA/-
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 7 bp deleted in Exon 1 (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- None
- Flanking Sequence
-
CGTTCATCATGACTTTAATGCTTTTAAAAACATTTTATTATGTTGATATGGTCATCTAAAATCTGCATTTTAAATCTATATCTATAATTTAGCTCTCTAACTACAGTAATATTTAAGTATGACTAGTTTCACAAGGCATGACATCCCATATTTCTCTGTTTTCCAACTCATTTTTTGGGATGCGTGAGTGAGGAGAGGCGGGACGGCGCGTGACATCACTCATCTGTATAAAAGCCCCAGCTGTGTCTGTGCGCTCGCGCTGTGAGGCTGCAGAGAAAGAGAGAGAGAGAGAGGCGCGCGCACGCTCGCTCCAGCAAACAAAGAGACCCGTCAACATCATCCACGGTGCACCAGCAGATCCCGCTCCAGCAAGGCCACGAGCTGCAACCATGACTGCAAACGGAACCAGCGACATGCTCAAAATCCAATTCGGATTGATCAACTGCGGGAACAAGTACCTCACGGCCGAGACCTTCGGCTTCAAGATCAATGCATCAGCC
ACCAGCA/- TGAAGAAGAAGCAGATTTGGACCCTGGAGCAAGACGGAGATGATTCAAACATGTTCTTCCTGAAGAGCCACCTGGGACGGTACATCGCAGCCGACAAAGACGGCAACGTGACGGGTGACAGCGAGACCCCGGGCGAGGACTGTCGCTTCATAATCACCGCACATGATGATGGGCGCTGGTCACTGCAGTCCGAGCCGCACAAGCGCTACCTGGGCGGCACCGAGGACAGGATAACCTGCTTCGCCCAGACCATCTCCATCGCGGAGAAATGGAGCGTGCACATCGCCATGCACCCACAGGTCAACATCTTCAGCGTGACTAGAAAAAGGTACGCGCACCTGAGCTCTGAGCAGAACGAGATAGCCATCGACCGGGATGTACCCTGGGGCGTGGATTCCCTCATCACCCTGGTCTTCCAGGACCAGAGGTACCACCTTCAGACCTCCGACAACCGCTTCCTGAAGAACGACGGCAGCCTGTCCCAGACGGCGGATAAGACT - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| fscn1azd1011/zd1011 | Homozygous | ♀+/- ♂+/- | Fig. 2  from Boer et al., 2015 | ||
| fscn1azd1011/zd1011 | Homozygous | ♀-/- ♂+/- | 7 figures from Boer et al., 2015 | 4 figures from Boer et al., 2015 | |
| fscn1azd1011/zd1011; sb2Tg | Complex | Fig. 7 from Boer et al., 2015 | Fig. 7 from Boer et al., 2015 | ||
| fscn1azd1011/zd1011; w37Tg | Complex | Fig. 7 from Boer et al., 2015 | Fig. 7 from Boer et al., 2015 | ||
| fscn1azd1011/zd1011; zdf15Tg | Complex | Fig. 7 from Boer et al., 2015 | Fig. 7 from Boer et al., 2015 | ||
| fscn1azd1011/zd1011 + MO2-cxcr4a | Complex | 2 figures from Boer et al., 2015 | Fig. S9 from Boer et al., 2015 |
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Supplemental Information
- Genotyping protocol
- None
- Boer, E.F., Jette, C.A., Stewart, R.A. (2016) Neural Crest Migration and Survival Are Susceptible to Morpholino-Induced Artifacts. PLoS One. 11:e0167278
- Boer, E.F., Howell, E.D., Schilling, T.F., Jette, C.A., Stewart, R.A. (2015) Fascin1-Dependent Filopodia are Required for Directional Migration of a Subset of Neural Crest Cells. PLoS Genetics. 11:e1004946
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