ZFIN Person: Yan, Yi-Lin

ZFIN ID: ZDB-PERS-960805-540

ZFIN ID: ZDB-PERS-960805-540

Yan, Yi-Lin

Email:	yan@oregon.uoregon.edu
URL:
Affiliation:	Postlethwait Zebrafish Genetics Laboratory
Address:	Institute of Neuroscience 1254 University of Oregon Eugene, OR 97403-1254 USA
Country:	United States
Phone:	(541) 346-4495
Fax:	(541) 346-4548
ORCID ID:

BIOGRAPHY AND RESEARCH INTERESTS

PUBLICATIONS

Petersen, A.M., Small, C.M., Yan, Y.L., Wilson, C., Batzel, P., Bremiller, R.A., Buck, C.L., von Hippel, F.A., Cresko, W.A., Postlethwait, J.H. (2022) Evolution and developmental expression of the sodium-iodide symporter (NIS, slc5a5) gene family: Implications for perchlorate toxicology. Evolutionary Applications. 15:1079-1098

Ravenscroft, T.A., Phillips, J.B., Fieg, E., Bajikar, S.S., Peirce, J., Wegner, J., Luna, A.A., Fox, E.J., Yan, Y.L., Rosenfeld, J.A., Zirin, J., Kanca, O., Undiagnosed Diseases Network, Benke, P.J., Cameron, E.S., Strehlow, V., Platzer, K., Jamra, R.A., Klöckner, C., Osmond, M., Licata, T., Rojas, S., Dyment, D., Chong, J.S.C., Lincoln, S., Stoler, J.M., Postlethwait, J.H., Wangler, M.F., Yamamoto, S., Krier, J., Westerfield, M., Bellen, H.J. (2021) Heterozygous loss-of-function variants significantly expand the phenotypes associated with loss of GDF11. Genetics in medicine : official journal of the American College of Medical Genetics. 23(10):1889-1900

Yan, Y.L., Titus, T., Desvignes, T., BreMiller, R., Batzel, P., Sydes, J., Farnsworth, D., Dillon, D., Wegner, J., Phillips, J.B., Peirce, J., Dowd, J., Undiagnosed Diseases Network, Buck, C.L., Miller, A., Westerfield, M., Postlethwait, J.H. (2021) Erratum to: A fish with no sex: gonadal and adrenal functions partition between zebrafish NR5A1 co-orthologs. Genetics. 218(1)

Postlethwait, J.H., Massaquoi, M.S., Farnsworth, D.R., Yan, Y.L., Guillemin, K., Miller, A.C. (2021) The SARS-CoV-2 receptor and other key components of the Renin-Angiotensin-Aldosterone System related to COVID-19 are expressed in enterocytes in larval zebrafish. Biology Open. 10(3):

Yan, Y.L., Titus, T., Desvignes, T., BreMiller, R., Batzel, P., Sydes, J., Farnsworth, D., Dillon, D., Wegner, J., Phillips, J.B., Peirce, J., Dowd, J., Undiagnosed Diseases Network, Buck, C.L., Miller, A., Westerfield, M., Postlethwait, J.H. (2021) A fish with no sex: gonadal and adrenal functions partition between zebrafish NR5A1 co-orthologs. Genetics. 217(2)

Yan, Y.L., Batzel, P., Titus, T., Sydes, J., Desvignes, T., Bremiller, R., Draper, B., Postlethwait, J.H. (2019) A Hormone That Lost Its Receptor: Anti-Müllerian Hormone (AMH) in Zebrafish Gonad Development and Sex Determination. Genetics. 213(2):529-553

Kossack, M.E., High, S.K., Hopton, R.E., Yan, Y.L., Postlethwait, J.H., Draper, B.W. (2018) Female Sex Development and Reproductive Duct Formation Depend on Wnt4a in Zebrafish. Genetics. 211(1):219-233

Yan, Y.L., Desvignes, T., BreMiller, R., Wilson, C., Dillon, D., High, S., Draper, B., Buck, C.L., Postlethwait, J. (2017) The gonadal soma controls ovarian follicle proliferation through Gsdf in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 246(11):925-945

Postlethwait, J.H., Yan, Y.L., Desvignes, T., Allard, C., Titus, T., Le François, N.R., Detrich, H.W. (2016) Embryogenesis and early skeletogenesis in the Antarctic Bullhead notothen, Notothenia coriiceps. Developmental Dynamics : an official publication of the American Association of Anatomists. 245(11):1066-1080

Talbot, J.C., Nichols, J.T., Yan, Y.L., Leonard, I.F., BreMiller, R.A., Amacher, S.L., Postlethwait, J.H., Kimmel, C.B. (2016) Pharyngeal morphogenesis requires fras1-itga8- dependent epithelial-mesenchymal interaction. Developmental Biology. 416(1):136-48

Jiang, Y., Yan, Y., Wang, X., Zhu, G., Xu, Y.J. (2016) Hepcidin inhibition on the effect of osteogenesis in zebrafish. Biochemical and Biophysical Research Communications. 476(1):1-6

Huang, J., Zhong, Z., Wang, M., Chen, X., Tan, Y., Zhang, S., He, W., He, X., Huang, G., Lu, H., Wu, P., Che, Y., Yan, Y.L., Postlethwait, J.H., Chen, W., Wang, H. (2015) Circadian modulation of dopamine levels and dopaminergic neuron development contributes to attention deficiency and hyperactive behavior. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35:2572-87

Wilson, C.A., High, S.K., McCluskey, B.M., Amores, A., Yan, Y.L., Titus, T.A., Anderson, J.L., Batzel, P., Carvan, M.J., Schartl, M., Postlethwait, J.H. (2014) Wild Sex in Zebrafish: Loss of the Natural Sex Determinant in Domesticated Strains. Genetics. 198(3):1291-308

Chen, B., Yan, Y.L., Liu, C., Bo, L., Li, G.F., Wang, H., and Xu, Y.J. (2014) Therapeutic effect of deferoxamine on iron overload-induced inhibition of osteogenesis in a zebrafish model. Calcified tissue international. 94(3):353-360

Rodríguez-Marí, A., Cañestro, C., Bremiller, R.A., Catchen, J.M., Yan, Y.L., and Postlethwait, J.H. (2013) Retinoic Acid metabolic genes, meiosis, and gonadal sex differentiation in zebrafish. PLoS One. 8(9):e73951

Yan, Y.L., Bhattacharya, P., He, X., Ponugoti, B., Marquardt, B., Layman, J., Grunloh, M., Postlethwait, J.H., and Rubin, D. (2012) Duplicated zebrafish co-orthologs of parathyroid hormone-related peptide (PTHrP, Pthlh) play different roles in craniofacial skeletogenesis. The Journal of endocrinology. 214(3):421-435

Talbot, J.C., Walker, M.B., Carney, T.J., Huycke, T.R., Yan, Y.L., Bremiller, R.A., Gai, L., Delaurier, A., Postlethwait, J.H., Hammerschmidt, M., and Kimmel, C.B. (2012) fras1 shapes endodermal pouch 1 and stabilizes zebrafish pharyngeal skeletal development. Development (Cambridge, England). 139(15):2804-2813

Eames, B.F., Amores, A., Yan, Y.L., and Postlethwait, J.H. (2012) Evolution of the osteoblast: Skeletogenesis in gar and zebrafish. BMC Evolutionary Biology. 12(1):27

Bhattacharya, P., Yan, Y.L., Postlethwait, J., and Rubin, D. (2011) Evolution of the vertebrate pth2 (tip39) gene family and the regulation of PTH type 2 receptor (pth2r) and its endogenous ligand pth2 by hedgehog signaling in zebrafish development. The Journal of endocrinology. 211(2):187-200

He, X., Yan, Y.L., Eberhart, J.K., Herpin, A., Wagner, T.U., Schartl, M., and Postlethwait, J.H. (2011) miR-196 regulates axial patterning and pectoral appendage initiation. Developmental Biology. 357(2):463-77

Song, H., Yan, Y.L., Titus, T., He, X., and Postlethwait, J.H. (2011) The role of stat1b in zebrafish hematopoiesis. Mechanisms of Development. 128(7-10):442-56

Eames, B.F., Yan, Y.L., Swartz, M.E., Levic, D.S., Knapik, E.W., Postlethwait, J.H., and Kimmel, C.B. (2011) Mutations in fam20b and xylt1 Reveal That Cartilage Matrix Controls Timing of Endochondral Ossification by Inhibiting Chondrocyte Maturation. PLoS Genetics. 7(8):e1002246

He, X., Yan, Y.L., Delaurier, A., and Postlethwait, J.H. (2011) Observation of miRNA Gene Expression in Zebrafish Embryos by In Situ Hybridization to MicroRNA Primary Transcripts. Zebrafish. 8(1):1-8

Rodriguez-Mari, A., Wilson, C., Titus, T.A., Cañestro, C., Bremiller, R.A., Yan, Y.L., Nanda, I., Johnston, A., Kanki, J.P., Gray, E.M., He, X., Spitsbergen, J., Schindler, D., and Postlethwait, J.H. (2011) Roles of brca2 (fancd1) in Oocyte Nuclear Architecture, Gametogenesis, Gonad Tumors, and Genome Stability in Zebrafish. PLoS Genetics. 7(3):e1001357

Eames, B.F., Singer, A., Smith, G.A., Wood, Z.A., Yan, Y.L., He, X., Polizzi, S.J., Catchen, J.M., Rodriguez-Mari, A., Linbo, T., Raible, D.W., and Postlethwait, J.H. (2010) UDP xylose synthase 1 is required for morphogenesis and histogenesis of the craniofacial skeleton. Developmental Biology. 341(2):400-415

Jovelin, R., Yan, Y.L., He, X., Catchen, J., Amores, A., Canestro, C., Yokoi, H., and Postlethwait, J.H. (2010) Evolution of developmental regulation in the vertebrate FgfD subfamily. Journal of experimental zoology. Part B, Molecular and developmental evolution. 314(1):33-56

Albertson, R.C., Yan, Y.L., Titus, T.A., Pisano, E., Vacchi, M., Yelick, P.C., Detrich, H.W. 3rd, and Postlethwait, J.H. (2010) Molecular pedomorphism underlies craniofacial skeletal evolution in Antarctic notothenioid fishes. BMC Evolutionary Biology. 10:4

Titus, T.A., Yan, Y.L., Wilson, C., Starks, A.M., Frohnmayer, J.D., Canestro, C., Rodriguez-Mari, A., He, X., and Postlethwait, J.H. (2009) The Fanconi anemia/BRCA gene network in zebrafish: Embryonic expression and comparative genomics. Mutation research. 668(1-2):117-132

Yokoi, H., Yan, Y.L., Miller, M.R., Bremiller, R.A., Catchen, J.M., Johnson, E.A., and Postlethwait, J.H. (2009) Expression profiling of zebrafish sox9 mutants reveals that Sox9 is required for retinal differentiation. Developmental Biology. 329(1):1-15

Nakamura, Y., He, X., Kobayashi, T., Yan, Y.L., Postlethwait, J.H., and Warman, M.L. (2008) Unique roles of microRNA140 and its host gene WWP2 in cartilage biology. Journal of musculoskeletal & neuronal interactions. 8(4):321-322

Rotllant, J., Liu, D., Yan, Y.L., Postlethwait, J.H., Westerfield, M., and Du, S.J. (2008) Sparc (Osteonectin) functions in morphogenesis of the pharyngeal skeleton and inner ear. Matrix biology : journal of the International Society for Matrix Biology. 27(6):561-572

Eberhart, J.K., He, X., Swartz, M.E., Yan, Y.L., Song, H., Boling, T.C., Kunerth, A.K., Walker, M.B., Kimmel, C.B., and Postlethwait, J.H. (2008) MicroRNA Mirn140 modulates Pdgf signaling during palatogenesis. Nature Genetics. 40(3):290-298

Jovelin, R., He, X., Amores, A., Yan, Y.L., Shi, R., Qin, B., Roe, B., Cresko, W.A., and Postlethwait, J.H. (2007) Duplication and divergence of fgf8 functions in teleost development and evolution. Journal of experimental zoology. Part B, Molecular and developmental evolution. 308B(6):730-743

Sakata, S.I., Yan, Y., Satou, Y., Momoi, A., Ngo-Hazelett, P., Nozaki, M., Furutani-Seiki, M., Postlethwait, J.H., Yonehara, S., and Sakamaki, K. (2007) Conserved function of caspase-8 in apoptosis during bony fish evolution. Gene. 396(1):134-148

Miller, M.R., Atwood, T.S., Eames, B.F., Eberhart, J.K., Yan, Y.L., Postlethwait, J.H., and Johnson, E.A. (2007) RAD marker microarrays enable rapid mapping of zebrafish mutations. Genome biology. 8(6):R105

Nolte, C., Rastegar, M., Amores, A., Bouchard, M., Grote, D., Maas, R., Kovacs, E.N., Postlethwait, J., Rambaldi, I., Rowan, S., Yan, Y.L., Zhang, F., and Featherstone, M. (2006) Stereospecificity and PAX6 function direct Hoxd4 neural enhancer activity along the antero-posterior axis. Developmental Biology. 299(2):582-593

Tallafuss, A., Hale, L.A., Yan, Y.L., Dudley, L., Eisen, J.S., and Postlethwait, J.H. (2006) Characterization of retinoid-X receptor genes rxra, rxrba, rxrbb and rxrg during zebrafish development. Gene expression patterns : GEP. 6(5):556-565

Hale, L.A., Tallafuss, A., Yan, Y.L., Dudley, L., Eisen, J.S., and Postlethwait, J.H. (2006) Characterization of the retinoic acid receptor genes raraa, rarab and rarg during zebrafish development. Gene expression patterns : GEP. 6(5):546-555

Bromee, T., Venkatesh, B., Brenner, S., Postlethwait, J.H., Yan, Y.L., and Larhammar, D. (2006) Uneven evolutionary rates of bradykinin B1 and B2 receptors in vertebrate lineages. Gene. 373:100-108

Rodríguez-Marí, A., Yan, Y.L., Bremiller, R.A., Wilson, C., Cañestro, C., and Postlethwait, J.H. (2005) Characterization and expression pattern of zebrafish anti-Müllerian hormone (amh) relative to sox9a, sox9b, and cyp19a1a, during gonad development. Gene expression patterns : GEP. 5(5):655-667

Lagerstrom, M.C., Fredriksson, R., Bjarnadottir, T.K., Fridmanis, D., Holmquist, T., Andersson, J., Yan, Y.L., Raudsepp, T., Zoorob, R., Kukkonen, J.P., Lundin, L.G., Klovins, J., Chowdhary, B.P., Postlethwait, J.H., and Schioth, H.B. (2005) Origin of the prolactin-releasing hormone (PRLH) receptors: evidence of coevolution between PRLH and a redundant neuropeptide Y receptor during vertebrate evolution. Genomics. 85(6):688-703

Gloriam, D.E., Bjarnadóttir, T.K., Yan, Y.L., Postlethwait, J.H., Schiöth, H.B., and Fredriksson, R. (2005) The repertoire of trace amine G-protein-coupled receptors: large expansion in zebrafish. Molecular phylogenetics and evolution. 35(2):470-482

Yan, Y.L., Willoughby, J., Liu, D., Crump, J.G., Wilson, C., Miller, C.T., Singer, A., Kimmel, C., Westerfield, M., and Postlethwait, J.H. (2005) A pair of Sox: distinct and overlapping functions of zebrafish sox9 co-orthologs in craniofacial and pectoral fin development. Development (Cambridge, England). 132(5):1069-1083

Papasani, M.R., Gensure, R.C., Yan, Y.L., Gunes, Y., Postlethwait, J.H., Ponugoti, B., John, M.R., Jüppner, H., and Rubin, D.A. (2004) Identification and characterization of the zebrafish and fugu genes encoding tuberoinfundibular peptide 39 (TIP39). Endocrinology. 145(11):5294-5304

Ruuskanen, J., Xhaard, H., Marjamäki, A., Salaneck, E., Salminen, T., Yan, Y.-L., Postlethwait, J.H., Johnson, M.S., Larhammar, D., and Scheinin, M. (2004) Identification of duplicated fourth {alpha}2-adrenergic receptor subtype by cloning and mapping of five receptor genes in zebrafish. Mol. Biol. Evol.. 10:14-28

Fredriksson, R., Larson E.T., Yan, Y.-L., Postlethwait, J.H., and Larhammar, D. (2004) Novel neuropeptide Y Y2-like receptor subtype in zebrafish and frogs supports early vertebrate chromosome duplications. Journal of molecular evolution. 58(1):106-114

Amores, A., Suzuki, T., Yan, Y.-L., Pomeroy, J., Singer, A., Amemiya, C., and Postlethwait, J.H. (2004) Developmental roles of pufferfish hox clusters and genome evolution in ray-fin fish. Genome research. 14(1):1-10

Cresko, W.A., Yan, Y.L., Baltrus, D.A., Amores, A., Singer, A., Rodriguez-Mari, A., and Postlethwait, J.H. (2003) Genome duplication, subfunction partitioning, and lineage divergence: Sox9 in stickleback and zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 228(3):480-489

Rhinn, M., Lun, K., Amores, A., Yan, Y.-L., Postlethwait, J.H., and Brand, M. (2003) Cloning, expression and relationship of zebrafish gbx1 and gbx2 genes to Fgf signaling. ZFIN Direct Data Submission.

Rhinn, M., Lun, K., Amores, A., Yan, Y.-L., Postlethwait, J.H., and Brand, M. (2003) Cloning, expression and relationship of zebrafish gbx1 and gbx2 genes to Fgf signaling. Mechanisms of Development. 120(8):919-936

Zhao, C.-T., Shi, K.-H., Su, Y., Liang, L.-Y., Yan, Y.-L, Postlethwait, J., and Meng, A.-M. (2003) Two variants of zebrafish p100 are expressed during embryogenesis and regulated by Nodal signaling. FEBS letters. 543(1-3):190-195

Liu, D., Chu, H., Maves, L., Yan, Y.-L., Morcos, P.A., Postlethwait, J.H., and Westerfield, M. (2003) Fgf3 and Fgf8 dependent and independent transcription factors are required for otic placode specification. Development (Cambridge, England). 130(10):2213-2224

Yan, Y.-L., Miller, C.T., Nissen, R.M., Singer, A., Liu, D., Kirn, A., Draper, B., Willoughby, J., Morcos, P.A., Amsterdam, A., Chung, B.-C., Westerfield, M., Haffter, P., Hopkins, N., Kimmel, C., and Postlethwait, J.H. (2002) A zebrafish sox9 gene required for cartilage morphogenesis. Development (Cambridge, England). 129(21):5065-5079

Ringholm, A., Fredriksson, R., Poliakova, N., Yan, Y.-L., Postlethwait, J.H., Larhammar, D., and Schiöth, H.B. (2002) One melanocortin 4 and two melanocortin 5 receptors from zebrafish show remarkable conservation in structure and pharmacology. Journal of neurochemistry. 82(1):6-18

Dunér, T., Conlon, J.M., Kukkonen, J.P., Akerman, K.E.O., Yan, Y.-L., Postlethwait, J.H., and Larhammar, D. (2002) Cloning, structural characterization and functional expression of a zebrafish bradykinin B2-related receptor. The Biochemical journal. 364(3):817-824

Rajarao, J.R., Canfield, V.A., Loppin, B., Thisse, B., Thisse, C., Yan, Y.-L., Postlethwait, J.H., and Levenson, R. (2002) Two Na,K-ATPase beta 2 subunit isoforms are differentially expressed within the central nervous system and sensory organs during zebrafish embryogenesis. Developmental Dynamics : an official publication of the American Association of Anatomists. 223(2):254-261

Singer, A., Perlman, H., Yan, Y.-L., Walker, C., Corley-Smith, G., Brandhorst, B., and Postlethwait, J. (2002) Sex-specific recombination rates in zebrafish (Danio rerio). Genetics. 160(2):649-657

Willot, V., Mathieu, J., Lu, Y., Schmid, B., Sidi, S., Yan, Y.-L., Postlethwait, J.H., Mullins, M., Rosa, F., and Peyriéras, N. (2002) Cooperative action of ADMP- and BMP-mediated pathways in regulating cell fates in the zebrafish gastrula. Developmental Biology. 241(1):59-78

Henry, C.A., Crawford, B.D., Yan, Y.-L., Postlethwait, J., Cooper, M.S., and Hille, M.B. (2001) Roles for zebrafish focal adhesion kinase in notochord and somite morphogenesis. Developmental Biology. 240(2):474-487

Chiang, E.F.L., Yan, Y.L., Tong, S.K., Hsiao, P.H., Guiguen, Y., Postlethwait, J., and Chung, B.C. (2001) Characterization of duplicated zebrafish cyp19 genes. The Journal of experimental zoology. 290(7):709-714

Crosier, P.S., Bardsley, A., Horsfield, J.A., Krassowska, A.K., Lavallie, E.R., Collins-Racie, L.A., Postlethwait, J.H., Yan, Y.-L., McCoy, J.M., and Crosier, K.E. (2001) In situ hybridization screen in zebrafish for the selection of genes encoding secreted proteins. Developmental Dynamics : an official publication of the American Association of Anatomists. 222(4):637-644

Oates, A.C., Pratt, S.J., Vail, B., Yan, Y.-L., Ho, R.K., Johnson, S.L., Postlethwait, J.H., and Zon, L.I. (2001) The zebrafish klf gene family. Blood. 98(6):1792-1801

Varga, Z.M., Amores, A., Lewis, K.E., Yan, Y.-L., Postlethwait, J.H., Eisen, J.S., and Westerfield, M. (2001) Zebrafish smoothened functions in ventral neural tube specification and axon tract formation. Development (Cambridge, England). 128(18):3497-3509

Rajarao, S.J., Canfield, V.A., Mohideen, M.A., Yan, Y.-L., Postlethwait, J.H., Cheng, K.C., and Levenson, R. (2001) The repertoire of Na,K-ATPase alpha and beta subunit genes expressed in the zebrafish, Danio rerio. Genome research. 11(7):1211-1220

Chiang, E.F., Yan, Y.-L., Guiguen, Y., Postlethwait, J., and Chung, B.-C. (2001) Two Cyp19 (P450 aromatase) genes on duplicated zebrafish chromosomes are expressed in ovary or brain. Mol. Biol. Evol.. 18(4):542-550

Chiang, E., Pai, C.-I., Wyatt, M., Yan, Y-L., Postlethwait, J., and Chung, B.-C. (2001) Two sox9 genes on duplicated zebrafish chromosomes: expression of similar transcription activators in distinct sites. Developmental Biology. 229:149-163

Bertrand, C., Chatonnet, A., Takke, C., Yan, Y.-L., Postlethwait, J., Toutant, J.P., and Cousin, X. (2001) Zebrafish Acetylcholinesterase Is Encoded by a Single Gene Localized on Linkage Group 7: Gene structure and polymorphism; molecular forms and expression pattern during development. The Journal of biological chemistry. 276(1):464-474

Postlethwait, J.H., Woods, I.G., Ngo-Hazelett, P., Yan, Y.-L., Kelly, P.D., Chu, F., Huang, H., Hill-Force, A., and Talbot, W.S. (2000) Zebrafish comparative genomics and the origins of vertebrate chromosomes. Genome research. 10(12):1890-1902

Woods, I.G., Kelly, P.D., Chu, F., Ngo-Hazelett, P., Yan, Y.-L., Huang, H., Postlethwait, J.H., and Talbot, W.S. (2000) A comparative map of the zebrafish genome. Genome research. 10(12):1903-1914

Liao, W., Ho, C.Y., Yan, Y.L., Postlethwait, J., and Stainier, D.Y.R. (2000) Hhex and Scl function in parallel to regulate early endothelial and blood differentiation in zebrafish. Development (Cambridge, England). 127(20):4303-4313

Söderberg, C., Wraith, A., Ringvall, M., Yan, Y.-L., Postlethwait, J.H., Brodin, L., and Larhammar, D. (2000) Zebrafish genes for neuropeptide Y and peptide YY reveal origin by chromosome duplication from an ancestral gene linked to the homeobox cluster. Journal of neurochemistry. 75(3):908-918

Kelly, P.D., Chu, F., Woods, I.G., Ngo-Hazelett, P., Cardozo, T., Huang, H., Kimm, F., Liao, L., Yan, Y.L., Zhou, Y., Johnson, S.L., Abagyan, R., Schier, A.F., Postlethwait, J.H., and Talbot, W.S. (2000) Genetic linkage mapping of zebrafish genes and ESTs. Genome research. 10(4):558-567

De Martino, S., Yan, Y.-L., Jowett, T., Postlethwait, J.H., Varga, Z.M., Ashworth, A., and Austin, C.A. (2000) Expression of sox11 gene duplicates in zebrafish suggests the reciprocal loss of ancestral gene expression patterns in development. Developmental Dynamics : an official publication of the American Association of Anatomists. 217(3):279-292

Brand, M., Lun, K., Reifers, F., Thisse, B., Thisse, C., Amores, A., Yan, Y.-L., and Postlethwait, J. (2000) Subdivision of the early zebrafish neural primordium in response to posteriorizing signals. The European journal of neuroscience. 12:60

Yan, Y.T., Gritsman, K., Ding, J., Burdine, R.D., Corrales, J.D., Price, S.M., Talbot, W.S., Schier, A.F., and Shen, M.M. (1999) Conserved requirement for EGF-CFC genes in vertebrate left-right axis formation. Genes & Development. 13(19):2527-2537

König, C., Yan, Y.L., Postlethwait, J., Wendler, S., and Campos-Ortega, J.A. (1999) A recessive mutation leading to vertebral ankylosis in zebrafish is associated with amino acid alterations in the homologue of the human membrane-associated guanylate kinase DLG3. Mechanisms of Development. 86(1-2):17-28

Starbäck, P., Lundell, I., Fredriksson, R., Berglund, M.M., Yan, Y.-L., Wraith, A., Söderberg, C., Postlethwait, J.H., and Larhammar, D. (1999) Neuropeptide Y receptor subtype with unique properties cloned in the zebrafish: the zYa receptor. Mol. Brain Res.. 70(2):242-252

Delot, E., Kataoka, H., Goutel, C., Yan, Y.L., Postlethwait, J., Wittbrodt, J., and Rosa, F.M. (1999) The BMP-related protein Radar: a maintenance factor for dorsal neuroectoderm cells?. Mechanisms of Development. 85(1-2):15-25

Force, A., Lynch, M., Pickett, F.B., Amores, A., Yan, Y.-L., and Postlethwait, J. (1999) Preservation of duplicate genes by complementary, degenerative mutations. Genetics. 151:1531-1545

Davidson, A.J., Postlethwait, J.H., Yan, Y.-L., Beier, D.R., Van Doren, C., Förnzler, D., Celeste, A.J., Crosier, K.E., and Crosier, P.S. (1999) Isolation of zebrafish gdf7 and comparative genetic mapping of genes belonging to the growth/differentiation factor 5, 6, 7 subgroup of the TGF-beta superfamily. Genome research. 9:121-129

Postlethwait, J.H., Yan, Y.-L., and Gates, M.A. (1999) Using random amplified polymorphic DNAs in zebrafish genomic analysis. In The Zebrafish: Genetics and Genomics, H.W. Detrich, III, M. Westerfield, and L.I. Zon, eds., San Diego, CA: Academic Press, Methods Cell Biol.. 60:165-179

Postlethwait, J., Amores, A., Force, A., and Yan, Y.-L. (1999) The zebrafish genome. In The Zebrafish: Genetics and Genomics, H.W. Detrich, III, M. Westerfield, and L.I. Zon, eds., San Diego, CA: Academic Press, Methods Cell Biol.. 60:149-163

Yan, Y.-L., Jowett, T., and Postlethwait, J.H. (1998) Ectopic expression of hoxb2 after retinoic acid treatment of mRNA injection: disruption of hindbrain and craniofacial morphogenesis in zebrafish embryos. Developmental Dynamics : an official publication of the American Association of Anatomists. 213:370-385

Amores, A., Force, A., Yan, Y.-L. Joly, L., Amemiya, C., Fritz, A., Ho, R., Langeland, J., Prince, V., Wang, Y.-L., Westerfield, M., Ekker, M., and Postlethwait, J.H. (1998) Zebrafish hox clusters and vertebrate genome evolution. Science (New York, N.Y.). 282:1711-1714

Yan, Y.-L., Talbot, W.S., Egan, E.S., and Postlethwait, J.H. (1998) Mutant rescue by BAC clone injection in zebrafish. Genomics. 50:287-289

Postlethwait, J.H, Yan, Y.-L., Gates, M.A., Horne, S., Amores, A., Brownlie, A., Donovan, A., Egan, E.S., Force, A., Gong, Z., Goutel, C., Fritz, A., Kelsh, R., Knapik, E., Liao, E., Paw, B., Ransom, D., Singer, A., Thomson, M., Abduljabbar, T.S., Yelick, P., Beier, D., Joly, J.-S., Larhammar, D., Rosa, F., Westerfield, M., Zon, L.I., Johnson, S.L., and Talbot, W.S. (1998) Vertebrate genome evolution and the zebrafish gene map. Nature Genetics. 18:345-349

Halpern, M.E., Hatta, K., Amacher, S.L., Talbot, W.S., Yan, Y.-L., Thisse, B., Thisse, C., Postlethwait, J.H., and Kimmel, C.B. (1997) Genetic interactions in zebrafish midline development. Developmental Biology. 187(2):154-170

Moens, C.B., Yan, Y.L., Appel, B., Force, A.G., and Kimmel, C.B. (1996) valentino, a zebrafish gene required for normal hindbrain segmentation. Development (Cambridge, England). 122:3981-3990

Jowett, T. and Yan, Y.L. (1996) Double fluorescent in situ hybridization to zebrafish embryos. Trends in genetics : TIG. 12(10):387-389

Alexandre, D., Clarke, J.D.W., Oxtoby, E., Yan, Y.L., Jowett, T., and Holder, N. (1996) Ectopic expression of Hoxa-1 in the zebrafish alters the fate of the mandibular arch neural crest and phenocopies a retinoic acid-induced phenotype. Development (Cambridge, England). 122(3):735-746

Jowett, T. and Yan, Y.-L. (1996) Two-color whole-mount in situ hybridization. In A Laboratory Guide to RNA: Isolation, Analysis, and Synthesis, P.A. Krieg, ed., Wiley-Liss, Inc.. :381-409

Yan, Y.L., Hatta, K., Riggleman, B., and Postlethwait, J.H. (1995) Expression of a type II collagen gene in the zebrafish embryonic axis. Developmental Dynamics : an official publication of the American Association of Anatomists. 203:363-376

Jowett, T., Mancera, M., Amores, A., and Yan Y.-L. (1995) In situ hybridization to embryo whole mounts and tissue sections: mRNA detection and application to developmental studies. In In situ hybridization, M. Clark, ed., Germany: Chapman and Hall.

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