ZFIN Lab: Mark Cooper's Lab

ZFIN ID: ZDB-LAB-970424-95

Mark Cooper's Lab

PI/Director:	Cooper, Mark S.
Contact Person:	Cooper, Mark S.
Email:	mscooper@u.washington.edu
URL:	http://weber.u.washington.edu/~fishscop/
Address:	Department of Zoology University of Washington Box 351800 Seattle, WA 98195-1800 USA
Country:	United States
Phone:	(206) 543-8649
Fax:	(206) 543-3041
Line Designation:	None assigned

GENOMIC FEATURES ORIGINATING FROM THIS LAB No data available

STATEMENT OF RESEARCH INTERESTS

Axis formation, cellular mechanics of gastrulation and neurulation.

LAB MEMBERS

D'Amico, Leonard Graduate Student

ZEBRAFISH PUBLICATIONS OF LAB MEMBERS

Cornet, C., Calzolari, S., Miñana-Prieto, R., Dyballa, S., van Doornmalen, E., Rutjes, H., Savy, T., D'Amico, D., Terriente, J. (2017) ZeGlobalTox: An Innovative Approach to Address Organ Drug Toxicity Using Zebrafish. International Journal of Molecular Sciences. 18(4)

D'Amico, D., Estivill, X., Terriente, J. (2015) Switching to zebrafish neurobehavioral models: The obsessive-compulsive disorder paradigm. European Journal of Pharmacology. 759:142-50

Virta, V.C., and Cooper, M.S. (2011) Structural components and morphogenetic mechanics of the zebrafish yolk extension, a developmental module. Journal of experimental zoology. Part B, Molecular and developmental evolution. 316(1):76-92

Jin, S.W., Herzog, W., Santoro, M.M., Mitchell, T.S., Frantsve, J., Jungblut, B., Beis, D., Scott, I.C., D'Amico, L.A., Ober, E.A., Verkade, H., Field, H.A., Chi, N.C., Wehman, A.M., Baier, H., and Stainier, D.Y. (2007) A transgene-assisted genetic screen identifies essential regulators of vascular development in vertebrate embryos. Developmental Biology. 307(1):29-42

Scott, I.C., Masri, B., D'Amico, L.A., Jin, S.W., Jungblut, B., Wehman, A.M., Baier, H., Audigier, Y., and Stainier, D.Y. (2007) The G protein-coupled receptor agtrl1b regulates early development of myocardial progenitors. Developmental Cell. 12(3):403-413

D'Amico, L., Scott, I.C., Jungblut, B., and Stainier, D.Y. (2007) A Mutation in Zebrafish hmgcr1b Reveals a Role for Isoprenoids in Vertebrate Heart-Tube Formation. Current biology : CB. 17(3):252-259

Pyati, U.J., Cooper, M.S., Davidson, A.J., Nechiporuk, A., and Kimelman, D. (2006) Sustained Bmp signaling is essential for cloaca development in zebrafish. Development (Cambridge, England). 133(11):2275-2284

Beis, D., Bartman, T., Jin, S.W., Scott, I.C., D'Amico, L.A., Ober, E.A., Verkade, H., Frantsve, J., Field, H.A., Wehman, A., Baier, H., Tallafuss, A., Bally-Cuif, L., Chen, J.N., Stainier, D.Y., and Jungblut, B. (2005) Genetic and cellular analyses of zebrafish atrioventricular cushion and valve development. Development (Cambridge, England). 132(18):4193-4204

Cooper, M.S., Szeto, D.P., Sommers-Herivel, G., Topczewski, J., Solnica-Krezel, L., Kang, H.C., Johnson, I., and Kimelman, D. (2005) Visualizing morphogenesis in transgenic zebrafish embryos using BODIPY TR methyl ester dye as a vital counterstain for GFP. Developmental Dynamics : an official publication of the American Association of Anatomists. 232(2):359-368

Henry, C.A., Poage, C.T., McCarthy, M.B., Campos-Ortega, J., and Cooper, M.S. (2005) Regionally Autonomous Segmentation Within Zebrafish Presomitic Mesoderm. Zebrafish. 2(1):7-18

Cooper, M.S., Sommers-Herivel, G., Poage, C.T., McCarthy, M.B., Crawford, B.D., and Phillips, C. (2004) The Zebrafish DVD Exchange Project: a bioinformatics initiative. The Zebrafish: Genetics, Genomics and Informatics, 2nd ed., Methods Cell Biol.. 77:439-457

Langenberg, T., Brand, M., and Cooper, M.S. (2003) Imaging brain development and organogenesis in zebrafish using immobilized embryonic explants. Developmental Dynamics : an official publication of the American Association of Anatomists. 228(3):464-474

Solnica-Krezel, L. and Cooper, M.S. (2002) Cellular and genetic mechanisms of convergence and extension. Results and problems in cell differentiation. 40:136-165

Henry, C.A., Crawford, B.D., Yan, Y.-L., Postlethwait, J., Cooper, M.S., and Hille, M.B. (2001) Roles for zebrafish focal adhesion kinase in notochord and somite morphogenesis. Developmental Biology. 240(2):474-487

D'Amico, L.A. and Cooper, M.S. (2001) Morphogenetic domains in the yolk syncytial layer of axiating zebrafish embryos. Developmental Dynamics : an official publication of the American Association of Anatomists. 222(4):611-624

D'Amico, L.A. (2001) Morphogenesis of the zebrafish organizer region. Ph.D. Thesis.

Henry, C.A., Crawford, B.D., Sepich, D., Cooper, M.S., and Hille, M. (2000) Subcellular localization of focal adhesion kinase during zebrafish organogenesis: Distinct roles for FAK in notochord and somite morphogenesis. Molecular biology of the cell. 11:297

Henry, C.A., Hall, L.A., Hille, M.B., Solnica-Krezel, L., and Cooper, M.S. (2000) Somites in zebrafish doubly mutant for knypek and trilobite form without internal mesenchymal cells or compaction. Current biology : CB. 10(17):1063-1066

Beck, J.C., Murray, J.A., Willows, A.O.D., and Cooper,M.S. (2000) Computer-assisted visualizations of neural networks: expanding the field of view using seamless confocal montaging. Journal of Neuroscience Methods. 98(2):155-163

Cooper, M.S., D'Amico, L.A., and Henry, C.A. (1999) Confocal microscopic analysis of morphogenetic movements. In The Zebrafish: Biology. H.W. Detrich, L.I. Zon, and M. Westerfield, eds. Methods Cell Biol.. 59:179-204

Cooper, M.S., D'Amico, L.A., and Henry, C.A. (1999) Analyzing morphogenetic cell behaviors in vitally stained zebrafish embryos. Methods in molecular biology (Clifton, N.J.). 122:185-204

Cooper, M.S. and Kimmel, C.B. (1997) Morphogenetic cell behaviors during early teleost development. In Motion Analysis in Living Cells. Soll-D-R., ed., New York: Wiley-Liss.

D'Amico, L.A. and Cooper, M.S. (1997) Spatially distinct domains of cell behavior in the zebrafish organizer region. Biochemistry and cell biology = Biochimie et biologie cellulaire. 75:563-577

Cooper, M.S. and D'Amico, L.A. (1996) A cluster of noninvoluting endocytic cells at the margin of the zebrafish blastoderm marks the site of embryonic shield formation. Developmental Biology. 180(1):184-198

Cooper, M. (1995) FishScope. Time-lapse recordings and confocal images dealing with the developmental biology of fish.

Trimble A.C., Frost, D., and Cooper M.S. (1993) Cellular mechanics of zebrafish gastrulation and neurulation: a four-dimensional confocal imaging study. Soc. Cell Biol.