ZFIN Lab: Aquatic Bioinformatics Lab

ZFIN ID: ZDB-LAB-170209-2

ZFIN ID: ZDB-LAB-170209-2

Aquatic Bioinformatics Lab

PI/Director:	Xia, Xiao-Qin
Contact Person:	Xia, Xiao-Qin
Email:	xqxia@ihb.ac.cn
URL:
Address:	Institute of Hydrobiology, the Chinese Academy of Sciences Address: No. 7 Donghu South Road, Wuhan, China, 430072
Country:	China
Phone:	+86 27 68780915
Fax:	+86 27 68780915
Line Designation:	None assigned

GENOMIC FEATURES ORIGINATING FROM THIS LAB No data available

STATEMENT OF RESEARCH INTERESTS

In general, we aim to develop bioinformatics algorithms & tools for genomics, and to apply them in genome research. Currently our interestes cover:
(1) Sequencing strategies and gene function annotation;
(2) Molecular design breeding;
(3) Algorithm development and database construction.

LAB MEMBERS

ZEBRAFISH PUBLICATIONS OF LAB MEMBERS

Zhao, X., Liu, Y., Xie, J., Zhang, L., Zhu, Q., Su, L., Guo, C., Li, H., Wang, G., Zhang, W., Cheng, Y., Wu, N., Xia, X.Q. (2023) The manipulation of cell suspensions from zebrafish intestinal mucosa contributes to understanding enteritis. Frontiers in immunology. 14:11939771193977

Guo, C., Ye, W., Shi, M., Duan, Y., Zhang, W., Cheng, Y., Xia, X.Q. (2023) FishSCT: a zebrafish-centric database for exploration and visualization of fish single-cell transcriptome. Science China. Life sciences. 66(9):2185-2188

Ouyang, G., Yuan, L., Xia, X.Q., Zhang, W., Shi, M. (2023) Transcriptomes of Zebrafish in Early Stages of Multiple Viral Invasions Reveal the Role of Sterols in Innate Immune Switch-On. International Journal of Molecular Sciences. 24(5):

Ye, W., Shi, M., Ren, K., Liu, Y., Duan, Y., Cheng, Y., Zhang, W., Xia, X.Q. (2022) Profiling the Spatial Expression Pattern and ceRNA Network of lncRNA, miRNA, and mRNA Associated with the Development of Intermuscular Bones in Zebrafish. Biology. 12(1):

Li, M., Zhao, X., Xie, J., Tong, X., Shan, J., Shi, M., Wang, G., Ye, W., Liu, Y., Unger, B.H., Cheng, Y., Zhang, W., Wu, N., Xia, X.Q. (2022) Dietary Inclusion of Seabuckthorn (Hippophae rhamnoides) Mitigates Foodborne Enteritis in Zebrafish Through the Gut-Liver Immune Axis. Frontiers in Physiology. 13:831226

Xie, J., Li, M., Ye, W., Shan, J., Zhao, X., Duan, Y., Liu, Y., Unger, B.H., Cheng, Y., Zhang, W., Wu, N., Xia, X.Q. (2021) Sinomenine Hydrochloride Ameliorates Fish Foodborne Enteritis via α7nAchR-Mediated Anti-Inflammatory Effect Whilst Altering Microbiota Composition. Frontiers in immunology. 12:766845

Wu, N., Xu, X., Wang, B., Li, X.M., Cheng, Y.Y., Li, M., Xia, X.Q., Zhang, Y.A. (2019) Anti-foodborne enteritis effect of galantamine potentially via acetylcholine anti-inflammatory pathway in fish. Fish & shellfish immunology. 97:204-215

Xia, H., Zhong, C., Wu, X., Chen, J., Tao, B., Xia, X., Shi, M., Zhu, Z., Trudeau, V.L., Hu, W. (2017) Mettl3 Mutation Disrupts Gamete Maturation and Reduces Fertility in Zebrafish.. Genetics. 208(2):729-743